Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00529
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23640.1 68417.m03404 potassium transporter / tiny root hair ...    30   2.0  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    29   2.7  
At3g12460.1 68416.m01551 hypothetical protein                          29   3.5  
At5g36670.1 68418.m04388 PHD finger family protein                     29   4.6  
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ...    28   6.1  
At1g24580.1 68414.m03092 zinc finger (C3HC4-type RING finger) fa...    28   8.1  

>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
           protein (TRH1) identical to tiny root hair 1 protein
           [Arabidopsis thaliana] gi|11181958|emb|CAC16137;
           KUP/HAK/KT Transporter family member, PMID:11500563;
           identical to cDNA mRNA for tiny root hair 1 protein
           (trh1) GI:11181957
          Length = 775

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 514 WVCGGTSVPSVFCTVCSMESALRNCLR*YRHLIFTIAPPATGVEFIHTTW 663
           WV G   +P +   V  +  A+  C R  RH+ F        + F+ TTW
Sbjct: 374 WVLGQIYIPEINWVVMILTLAVTICFRDTRHIAFAFGLACMTLAFV-TTW 422


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 558 MFHGECSEELFEMIPASHFYH 620
           MFH EC E  FE+I  SH +H
Sbjct: 112 MFHKECVESPFEIIHPSHPFH 132


>At3g12460.1 68416.m01551 hypothetical protein
          Length = 242

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 607 LIFTIAP-PATGVEFIHTTWSH---CGHPQCVSRGIFCYVPSGYGMSSPP 744
           L  T+ P P+   ++IH  + H     HP  V  G+  + PSGY  +SPP
Sbjct: 26  LFVTVTPDPSVIGQWIHDVFFHNRLSSHPLVVGVGVQ-WTPSGYHPASPP 74


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 643  EFIHTTWSHCGHPQCVSRGIFCYVPSGYGMS 735
            E +   W  C +P C   G FC+  SG+G +
Sbjct: 916  EVLLDVWQFCCYPACFGDGPFCFF-SGFGFA 945


>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
           XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 1012

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 520 CGGTSVPSVFC-TVCSMESALRN 585
           CGG S PS FC TV  ME  L N
Sbjct: 748 CGGDSQPSCFCSTVEGMEDVLTN 770


>At1g24580.1 68414.m03092 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 113

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 543 CILYCMFHGECSEELFEMIPASHFYHR 623
           C+  C F  E  EE+ E++   HF+HR
Sbjct: 68  CVCLCGFKEE--EEVSELVSCKHFFHR 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,748,476
Number of Sequences: 28952
Number of extensions: 292315
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)