Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00528
         (505 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.1  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   4.7  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   6.3  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   8.3  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   8.3  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 287 GKYLGVLQCEYCNNVF 240
           GK+ GV  CE C   F
Sbjct: 95  GKHYGVYSCEGCKGFF 110



 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 184 RLTQWLKLKPLHLNQPMTKKTLL 252
           +L QW KL P   + P+T +  L
Sbjct: 224 QLVQWAKLVPHFTSLPLTDQVQL 246


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 212 HYT*TNL*QRKRCCNIHTEEPQDIFPE 292
           H   TN    ++   +HT EP D+ PE
Sbjct: 201 HKKFTNALVLQQHIRLHTGEPTDLTPE 227


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 348 VNSCPYNLISGGIVCLDEIS 289
           +N C  N    G  C+D+I+
Sbjct: 69  INDCKVNPCENGGTCVDKIN 88


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 44  FFYFVSEIFNFFS 6
           F++F+S  F FF+
Sbjct: 239 FYFFISTFFYFFT 251


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 44  FFYFVSEIFNFFS 6
           F++F+S  F FF+
Sbjct: 235 FYFFISTFFYFFT 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,919
Number of Sequences: 336
Number of extensions: 1979
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11944578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)