Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00528
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41013-2|AAA82300.1|  557|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U41013-2|AAA82300.1|  557|Caenorhabditis elegans Hypothetical
           protein T06C10.3 protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +3

Query: 3   AREKVEDFRYKVEEYKKVESDIXXXXXXXXXXXXXXXXXQINNPN---PEETSETKSVED 173
           A+++ ED + +VEE K++E  +                   N+     PEE  + K  + 
Sbjct: 53  AKQEKEDDKKEVEEKKEIEKSVEAKVEGKVKAKVESTQNTDNSQELKAPEEKPKKKKKKK 112

Query: 174 FNVAANAMVETEAITPE 224
            N+  +A VE  +I PE
Sbjct: 113 SNLIVSASVEKLSIVPE 129


>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
           protein K07E3.1 protein.
          Length = 1061

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 126 NNPNPEETSETKSVEDFNVAANAMVETEAITPE---PTYDKENVVA 254
           N+       +TKS+ D     ++    E + PE   P +D+EN+ A
Sbjct: 722 NDSEQNSKLDTKSITDETTVKDSPSTEETVIPEKPKPAFDRENIAA 767


>AF039041-8|AAB94189.2|  448|Caenorhabditis elegans Hypothetical
           protein W03F8.2 protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
 Frame = +3

Query: 6   REKVEDFRYKVEEYKKVESDIXXXXXXXXXXXXXXXXXQINNPN---PEETSETKSVEDF 176
           +++ ED + +VEE K+ E  +                   N+     PEE  + K  +  
Sbjct: 89  KQEKEDDKKEVEEKKENEKPVDVKVEEKVMVKVEATQNTDNSQELKAPEEKPKKKKKKKS 148

Query: 177 NVAANAMVETEAITPE 224
           N+ A A VE  +I PE
Sbjct: 149 NIIATASVEKISIVPE 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,956
Number of Sequences: 27780
Number of extensions: 178715
Number of successful extensions: 752
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)