Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00528
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.6  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 275 QDIFPEISSKHTMPPEIRLYGQEFTLSE 358
           Q + P++S   T P E RLY      S+
Sbjct: 410 QTLRPQVSPDRTSPMEYRLYNPALIQSQ 437


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 287 GKYLGVLQCEYCNNVF 240
           GK+ GV  CE C   F
Sbjct: 119 GKHYGVYSCEGCKGFF 134


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 287 GKYLGVLQCEYCNNVF 240
           GK+ GV  CE C   F
Sbjct: 119 GKHYGVYSCEGCKGFF 134


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 141 EETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVAI 257
           +E+S  +SVE   +  NA+V T A    P  + E +  +
Sbjct: 26  QESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMAGV 64


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 410 TQNQNFDELQNNRI 451
           T+N NFD +Q N I
Sbjct: 318 TKNPNFDRMQGNPI 331


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 266 QCEYCNNVFFV 234
           QCEYC+  F V
Sbjct: 121 QCEYCSKSFSV 131


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 408 RPKTKISTSFKTTGFLLRQKNSNYLLTLLSRV 503
           RPKTK S   +TT   L +    +L   L ++
Sbjct: 40  RPKTKKSQGSRTTHNELEKNRRAHLRNCLEKL 71


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 121 K*ITPTLKKHLK 156
           K ITP ++KHLK
Sbjct: 313 KYITPLIQKHLK 324


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 281 IFPEISSKHTMPPEI 325
           I PE+ S+H + PEI
Sbjct: 251 ITPELYSEHLVVPEI 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,660
Number of Sequences: 438
Number of extensions: 2173
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)