Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00528
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    35   0.027
At3g05540.1 68416.m00607 translationally controlled tumor family...    30   0.77 
At1g03780.2 68414.m00358 targeting protein-related similar to mi...    29   2.4  
At1g03780.1 68414.m00359 targeting protein-related similar to mi...    29   2.4  
At5g54790.1 68418.m06825 hypothetical protein                          27   5.4  
At3g53790.1 68416.m05943 telomere-binding protein, putative simi...    27   7.2  
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain...    27   7.2  
At4g00450.1 68417.m00062 expressed protein                             27   9.5  
At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger) fa...    27   9.5  
At1g61390.1 68414.m06918 S-locus protein kinase, putative contai...    27   9.5  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +3

Query: 129 NPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVAIFTLKNPKIFSLKFHLNT 308
           NP+ EE  E + V+D       +V+T  +  +PTYDK+  +A +  K  K+ + K     
Sbjct: 48  NPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIA-YIKKYIKLLTPKLSEED 106

Query: 309 QCPLK 323
           Q   K
Sbjct: 107 QAVFK 111


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 129 NPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVV 251
           NP+ EE  E + V+D  V    +++T  +  +P++DK+  V
Sbjct: 35  NPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSFDKKQFV 75


>At1g03780.2 68414.m00358 targeting protein-related similar to
           microtubule-associated protein / targeting protein for
           Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
           Restricted expression proliferation associated protein
           100 (p100) (Differentially expressed in lung cells 2)
           (DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
           (C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
           sapiens}
          Length = 725

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 189 NAMVETEAITPEPTYDKENVVAIFTLKNPKIFSL 290
           N  V+    T EP  DKEN+    T K P  FSL
Sbjct: 133 NKTVDASDPTTEPIEDKENIAPACTPKPPMQFSL 166


>At1g03780.1 68414.m00359 targeting protein-related similar to
           microtubule-associated protein / targeting protein for
           Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
           Restricted expression proliferation associated protein
           100 (p100) (Differentially expressed in lung cells 2)
           (DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
           (C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
           sapiens}
          Length = 687

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 189 NAMVETEAITPEPTYDKENVVAIFTLKNPKIFSL 290
           N  V+    T EP  DKEN+    T K P  FSL
Sbjct: 133 NKTVDASDPTTEPIEDKENIAPACTPKPPMQFSL 166


>At5g54790.1 68418.m06825 hypothetical protein 
          Length = 119

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 126 NNPNPEETSETKSVEDFNVAANAMVETEAITPEPTYDKENVVA 254
           ++ NPEE+S T   EDF  A++++V+    +     D  + VA
Sbjct: 21  DDQNPEESSWTMYFEDFFEASSSIVDVGDFSSSSVSDAASFVA 63


>At3g53790.1 68416.m05943 telomere-binding protein, putative similar
           to telomere binding protein TBP1 [Nicotiana glutinosa]
           gi|23664357|gb|AAN39330
          Length = 400

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 153 ETKSVEDFNVAANAMVETEAITPEPTYDKENVVAIFTLKN 272
           ETK  +D NV  N  +ET  +  +P    EN+  +   K+
Sbjct: 62  ETKETKDDNVVVNNFLETMEVEVKPQPGLENLSQVLLSKD 101


>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to clathrin assembly protein AP180 (GI:6492344) [Xenopus
           laevis]
          Length = 571

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 153 ETKSVEDFNVAANAMVETEAITPEPTYDKEN 245
           +T  +ED N  A A+V T+A  P P + + N
Sbjct: 388 DTSVIEDQNALALAIVSTDADPPTPHFGQPN 418


>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 284 KYLGVLQCEYCNNVFFVIGWFRCNGFSFNHCVSRYIK 174
           +++G +   +  +VFF+I W  C+   F   V + IK
Sbjct: 478 RWIGAISTSFVCSVFFLIEWATCDFRDFRAGVPKDIK 514


>At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518 and a IBR domain,
           Pfam:PF01485
          Length = 320

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -3

Query: 263 CEYCNNVFFVIGWFR---CNGFSFNHCVSRYI 177
           CE C +   +I  FR   C+ F  N CVS+YI
Sbjct: 115 CEICVDSKSIIESFRIGGCSHFYCNDCVSKYI 146


>At1g61390.1 68414.m06918 S-locus protein kinase, putative contains
           protein kinase domain, Pfam:PF00069; contains S-locus
           glycoprotein family domain, Pfam:PF00954
          Length = 831

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 345 NSCPYNLI-SGGIVCLDEISGKISWGS 268
           N C   L+ +G +V +D++SGK  W S
Sbjct: 135 NKCHAELLDTGNLVVIDDVSGKTLWKS 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,289,895
Number of Sequences: 28952
Number of extensions: 161681
Number of successful extensions: 479
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)