Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00527
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0478 + 8775892-8776377 38 0.006
03_02_0485 - 8808139-8808618 38 0.008
03_02_0484 + 8805053-8805538 38 0.011
03_02_0483 - 8804021-8804485 38 0.011
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 37 0.019
01_01_0229 - 1943473-1943922 36 0.025
01_01_0231 + 1951047-1951499 36 0.033
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 33 0.18
01_01_0227 + 1933247-1933699 33 0.18
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.72
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067 30 1.7
10_05_0086 + 9025410-9025730,9025974-9026008,9026194-9026279,902... 29 3.8
07_01_1127 + 10456895-10457388,10457488-10458112 29 3.8
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 29 5.1
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 5.1
09_03_0036 + 11772940-11773171,11774995-11775104 29 5.1
04_01_0252 - 3329712-3331061 29 5.1
03_01_0491 + 3720842-3720958,3721904-3723109 29 5.1
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 28 8.8
>03_02_0478 + 8775892-8776377
Length = 161
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 459
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ E
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 460 SVESRLSSDGVLSVIAP 510
+++ + +GVL+V P
Sbjct: 130 QIKASM-ENGVLTVTVP 145
>03_02_0485 - 8808139-8808618
Length = 159
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 459
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 460 SVESRLSSDGVLSVIAP 510
+++ + +GVL+V P
Sbjct: 128 QIKASM-ENGVLTVTVP 143
>03_02_0484 + 8805053-8805538
Length = 161
Score = 37.5 bits (83), Expect = 0.011
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 459
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 460 SVESRLSSDGVLSVIAP 510
+++ + +GVL+V P
Sbjct: 130 QIKASM-ENGVLTVTVP 145
>03_02_0483 - 8804021-8804485
Length = 154
Score = 37.5 bits (83), Expect = 0.011
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 459
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 460 SVESRLSSDGVLSVIAP 510
+++ + +GVL+V P
Sbjct: 123 QIKASM-ENGVLTVTVP 138
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 36.7 bits (81), Expect = 0.019
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 459
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 460 SVESRLSSDGVLSVIAP 510
V++ L +GVL+V P
Sbjct: 119 QVKAGL-ENGVLTVTVP 134
>01_01_0229 - 1943473-1943922
Length = 149
Score = 36.3 bits (80), Expect = 0.025
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 459
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 460 SVESRLSSDGVLSVIAP 510
V++ + +GVL+V P
Sbjct: 118 QVKASM-ENGVLTVTVP 133
>01_01_0231 + 1951047-1951499
Length = 150
Score = 35.9 bits (79), Expect = 0.033
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 459
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 460 SVESRLSSDGVLSVIAP 510
V++ + +GVL+V P
Sbjct: 119 QVKAGM-ENGVLTVTVP 134
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Frame = +1
Query: 268 IKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ------HGYISRQ---- 417
+ D + ++ D+ + EE+ V D +V+ G+H++++ + G+ +
Sbjct: 137 VMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSS 196
Query: 418 FTRRYALPEGCTAESVESRLSSDGVLSVIAP 510
+ R ALP+ C V + L +GVL V P
Sbjct: 197 YDMRLALPDECDKSKVRAEL-KNGVLLVTVP 226
>01_01_0227 + 1933247-1933699
Length = 150
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 364 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAP 510
V+GK++E+ S +F RR+ LP G + V + + +GVL+V P
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVP 134
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 379 RVCLQPRCSRPPF*QRFLPGRNAGR 305
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
Length = 472
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 605 QGLSPSAVSAQVFYFNYLHSHSVIFVLKTDCF 700
+G+SPS+ S F+F LH + +F CF
Sbjct: 287 RGVSPSSASFVEFFFEALHHFTTVFESMASCF 318
>10_05_0086 +
9025410-9025730,9025974-9026008,9026194-9026279,
9026602-9026740,9028504-9028663
Length = 246
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 136 HGSTFRLGADS-GRFSQCCSRPPCEQRILPPVASPCCRGSSLGSSIKSDKDKFQVNLDV 309
HGST G +S GR + S PP LPP AS C SS SS S + ++ +DV
Sbjct: 36 HGSTGGGGEESSGRQATLQSSPP-----LPPPASSCALPSSWLSSTSSLLGRCRLPMDV 89
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 379 RVCLQPRCSRPPF*QRFLPGRNAGR 305
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = +1
Query: 424 RRYALPEGCTAESVESRLSSDGVLSVIAPGRCRQQWRVNARFRSP 558
RR ALP G E+ ESR S V S R R + R R R P
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGRGRPP 149
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 326 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 421
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 324 GRNLC*NGGRLHRG*RQTRGEERSAWLH 407
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 379 RVCLQPRCSRPPF*QRFLPGRNAGR 305
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 265 WSQGSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 110
WS +G KV A G GC K+F S+ +A+ H A +L F+
Sbjct: 379 WSLIGIKGDKV-------GADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 271 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 444
+SDKDK N+D + A E + V+ E K +EK + H Y + R L E
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKE 558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,560,345
Number of Sequences: 37544
Number of extensions: 482252
Number of successful extensions: 1432
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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