Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00527
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.1  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 448 SPPAKRSDE*IDAICN 401
           +PP   ++E +DA+CN
Sbjct: 453 APPQLPTEESVDALCN 468


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 588 PSPPCARVRFGRSESCVHPPLLAAPSWCDYRQ 493
           P P C     G      H PLLA PS+  + Q
Sbjct: 332 PEPDCIHELLG------HMPLLADPSFAQFSQ 357


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 538  SPSTAGGTFLVRLQTTHHLKTAGTPQIQPYSP 443
            S     G F +R  TT+HL+     +I    P
Sbjct: 932  SQQNVAGVFNLRPATTYHLRIVAENEIGASDP 963


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 94  NQRHFVVVDL*RCSLSFEDFSHLFQ 20
           N+   V++D  RCS+ +    H F+
Sbjct: 199 NKNGSVILDTARCSMKWTLIEHAFE 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,204
Number of Sequences: 438
Number of extensions: 3989
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)