Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00526
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   3.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.7  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 284 TVEAADHPHGVKSI-LHVLRRKLLIYYKSIAV 376
           T  A   P  +  I +H++  KL+ +YKS A+
Sbjct: 48  TASAVLLPFAIYHIFMHIVPTKLISFYKSTAI 79


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 413 QVHILIVHQQNVMGIWVVSRKVKCRNHLK 499
           +V + I   ++ + +W  +R+ KCR  L+
Sbjct: 159 EVAVKINLPESRVQVWFKNRRAKCRQQLQ 187


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +2

Query: 308 HGVKSILHVLRRKLLIYYKSIA-------VKSLTEKLNLKSWQVHILIVHQQNVMGI 457
           H  K+  +    KL   YKS+        + +LT++  L +W ++ ++ HQ   + +
Sbjct: 345 HYSKNTYNEQGNKLADLYKSLGPDSVYSFINNLTDRKLLSAWYMNTVLGHQNPYLAL 401


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +2

Query: 308 HGVKSILHVLRRKLLIYYKSIA-------VKSLTEKLNLKSWQVHILIVHQQNVMGI 457
           H  K+  +    KL   YKS+        + +LT++  L +W ++ ++ HQ   + +
Sbjct: 237 HYSKNTYNEQGNKLADLYKSLGPDSVYSFINNLTDRKLLSAWYMNTVLGHQNPYLAL 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,065
Number of Sequences: 336
Number of extensions: 3543
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)