Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00526
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PI... 99 3e-21
At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase PPI... 52 5e-07
At5g19370.1 68418.m02308 rhodanese-like domain-containing protei... 46 2e-05
At2g41020.2 68415.m05066 WW domain-containing protein contains P... 42 4e-04
At2g41020.1 68415.m05067 WW domain-containing protein contains P... 42 4e-04
At3g59770.1 68416.m06670 sacI homology domain-containing protein... 39 0.004
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 37 0.012
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 33 0.26
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 31 0.78
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 31 0.78
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 31 0.78
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 31 0.78
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 31 0.78
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 0.78
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 31 1.0
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 3.2
At3g32190.1 68416.m04102 hypothetical protein 28 5.5
At5g56550.1 68418.m07057 expressed protein 28 7.3
>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1)
/ cyclophilin / rotamase identical to Chain A, Solution
Structure Of Pin1at From Arabidopsis Thaliana
GI:22218833; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 119
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/89 (50%), Positives = 63/89 (70%), Gaps = 4/89 (4%)
Frame = +1
Query: 256 VRCSHLLVKHSGSRRPSSWREEH----ITRTKEEALDILQEYRRKIIDREAKFEELASTY 423
V+ SH+L+KH GSRR +SW++ +T T+E A++ L+ R I+ +A FEE+A+
Sbjct: 7 VKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRV 66
Query: 424 SDCSSAKRDGDLGRFKKGQMQKPFEDVAF 510
SDCSSAKR GDLG F +GQMQKPFE+ +
Sbjct: 67 SDCSSAKRGGDLGSFGRGQMQKPFEEATY 95
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 459 GSFQERSNAETI*RRRISLKIGQLSQPVHTDSGIHIILRTA 581
GSF + +LK+G +S V TDSG+HII RTA
Sbjct: 79 GSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119
>At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase
PPIC-type family protein similar to SP|Q9Y237
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
(EC 5.2.1.8) (Rotamase Pin4) (PPIase Pin4) (Parvulin 14)
{Homo sapiens}; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 142
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +1
Query: 394 AKFEELASTYSDCSSAKRDGDLGRFKKGQMQKPFEDVAF 510
A+F ++A+ YS+C S K+ GDLG F +G+M PF+DVAF
Sbjct: 77 AEFAKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAF 115
>At5g19370.1 68418.m02308 rhodanese-like domain-containing protein /
PPIC-type PPIASE domain-containing protein low
similarity to MPT-synthase sulfurylase [Synechococcus
sp. PCC 7942] GI:2950364; contains Pfam profiles
PF00581: Rhodanese-like domain, PF00639: PPIC-type
PPIASE domain; identical to cDNA peptidyl-prolyl
cis-trans isomerase GI:2246379
Length = 299
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +1
Query: 286 SGSRRPSSWRE---EHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGD 456
SGS S+ RE +H+ K +++ E ++K +D E + +LA+ YS C S K G
Sbjct: 85 SGSSGSSASREILVQHLL-VKNNDVELFAELQKKFLDGE-EMSDLAAEYSICPSKKDGGI 142
Query: 457 LGRFKKGQMQKPFEDVAF 510
LG K GQM FE+ AF
Sbjct: 143 LGWVKLGQMVPEFEEAAF 160
>At2g41020.2 68415.m05066 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 382
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 56 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 463
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
LP GW K ++G TYY N+HT QWE+P
Sbjct: 194 LPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 56 PAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
P + + +S + E W ++G Y+ N T SQWE P
Sbjct: 224 PVELSYATSSAPPVLSKEEWIETFDEASGHKYFYNTRTHVSQWEPP 269
>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
WW domain-containing protein contains Pfam profiles
PF00397: WW domain, PF02383: SacI homology domain;
identical to cDNA SAC domain protein 9 (SAC9)
GI:31415734
Length = 1630
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
LP GWE R TG +YY++ +TK + W P
Sbjct: 510 LPPGWEKRADAVTGKSYYIDHNTKTTTWSHP 540
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 89 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGP 202
++ LP+ W+ STG+ YY N T +Q+E+P P
Sbjct: 18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAP 55
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 140 GMTYYLNKHTKKSQWEKP 193
G Y+ NK TKKS WEKP
Sbjct: 217 GRKYFFNKRTKKSTWEKP 234
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 107 EGWEARKSRSTGMTYYLNKHTKKSQWEKPGG 199
+ W A KS + G+ YY N T +S +EKP G
Sbjct: 157 DAWTAHKSEA-GVLYYYNSVTGQSTYEKPPG 186
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 98 ILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
ILP A S + G YY N TK S W+ P
Sbjct: 203 ILPGTDWALVSTNDGKKYYYNNKTKVSSWQIP 234
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
LP W+A ST YY N T ++ W +P
Sbjct: 831 LPSEWQAYWDESTKKVYYGNTSTSQTSWTRP 861
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 89 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 89 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 89 QEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
++ LP+ W+ TG Y+ N T +Q+EKP
Sbjct: 15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 149 YYLNKHTKKSQWEKP 193
YY NK TK+S WEKP
Sbjct: 213 YYYNKRTKQSNWEKP 227
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPA 205
LP+ W+ TG Y+ N T +Q+E+P A
Sbjct: 17 LPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSA 51
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +1
Query: 262 CSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSA 441
CS L + + R + W +E +T + ++ + + + AK ++ Y +CSS+
Sbjct: 180 CSRLSQEKELTERHAKWLDEELTAKVDSYAELRRRHSDLESEMSAKLVDVEKNYIECSSS 239
>At3g32190.1 68416.m04102 hypothetical protein
Length = 358
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 322 HITRTKEEALDILQEYRRKIIDRE 393
H +RT E D++Q Y R ++DRE
Sbjct: 47 HSSRTNSELNDMIQYYERLLLDRE 70
>At5g56550.1 68418.m07057 expressed protein
Length = 172
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +1
Query: 319 EHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQMQKPFE 498
E TR +EE DI+QE D E + + S CS D D P E
Sbjct: 18 EDPTRIQEEE-DIVQEVSTTFSDEEDNSSSCSLSSSMCSDFTEDDDDDDVSSSSSNGPLE 76
Query: 499 DVA 507
D++
Sbjct: 77 DLS 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,508
Number of Sequences: 28952
Number of extensions: 284803
Number of successful extensions: 782
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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