Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00524
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    29   0.48 
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   7.8  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 522 NIQAYVFHHVLTTKYGMCLIVLLLSVYCVPPLN 424
           N+ ++ F+HV++ +YG+C     L V    PL+
Sbjct: 382 NLVSHFFYHVVSNQYGLCAFSSFLVVITKVPLH 414


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 357 LSNYKKLISKHLWTFKGTLFLFNLHNSSI 271
           LSN+  ++ K+L   KG   L N+  SSI
Sbjct: 300 LSNFSSIMLKNLGYVKGKALLMNMPTSSI 328


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 11  LLQLDTVLLISSFKILNLLTPPSIAKYRGN*RTRPH--VL*QLLSHGILRS 157
           +L+ D  ++     +L  L  P+I KYRG+ +T     ++ +   +G LRS
Sbjct: 45  MLKSDLSVIKMEIDLLKNLDHPNIVKYRGSYQTNDSLCIILEYCENGSLRS 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,525
Number of Sequences: 5004
Number of extensions: 45120
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)