Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00524
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 627

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 348 YKKLISKHLWTFKGTLFLFNLH 283
           ++++ISKHLWT   T F+ N++
Sbjct: 225 WEEIISKHLWTAVSTHFIENIY 246


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 538 NDT*VQYTSICFSPCPYN*IWNVSHCFASISLLCS 434
           N T  Q  +  F+PCP N  W+    ++  S  CS
Sbjct: 828 NGTNAQSRTCAFAPCPVNGAWSSWSAWSDCSKTCS 862


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,088
Number of Sequences: 59808
Number of extensions: 304706
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)