Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00523
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    30   1.5  

>U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical
           protein F20D12.1b protein.
          Length = 867

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 295 DSLNVKWSVEPMEIHRGCRLLS*NIVQSLHSIETTNHLYFTKEPL 161
           + L VKW+V    IH+GCR++  N    +  ++  +  Y+   PL
Sbjct: 189 EELRVKWAVAAKGIHKGCRIVGANGPLPILELDPQSTQYYASIPL 233


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 295 DSLNVKWSVEPMEIHRGCRLLS*NIVQSLHSIETTNHLYFTKEPL 161
           + L VKW+V    IH+GCR++  N    +  ++  +  Y+   PL
Sbjct: 352 EELRVKWAVAAKGIHKGCRIVGANGPLPILELDPQSTQYYASIPL 396


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/77 (31%), Positives = 32/77 (41%)
 Frame = -3

Query: 245 MPPALLKHSSKST*H*DYESPILHKRTIGFFCYISRQD*INSDPTPRGS*SAHCY*T*TS 66
           MP    K +  ST      SP+  KRT+GFF   S    I  D   + + +  C     S
Sbjct: 429 MPSTTEKTTFTSTSSSTTSSPVCSKRTVGFFTGNSTTS-ITQDQMRKLTHATFCRIFLNS 487

Query: 65  VYEDTGNLVSTKTNVLI 15
            + D     +TKT V I
Sbjct: 488 TFRDAAKSANTKTLVSI 504


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,895
Number of Sequences: 27780
Number of extensions: 310114
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)