Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00522
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    73   5e-14
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    67   3e-12
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    35   0.013
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.7  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   6.1  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.1  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   6.1  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   8.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   8.1  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   8.1  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    25   8.1  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.1  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 36/93 (38%), Positives = 57/93 (61%)
 Frame = +2

Query: 5   TSEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNK 184
           TSE  V+ +++    V KYK+AG++   V+++V+  C P A   +IC  GD+L+ E   K
Sbjct: 7   TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66

Query: 185 VFKKEKDSKKGIAFSTCVSVNNCIVTFRPLRAN 283
           V+ + KD+ KGIAF T VS N+      PL+++
Sbjct: 67  VY-RTKDAYKGIAFPTAVSPNDMAAHLSPLKSD 98



 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
 Frame = +1

Query: 259 HFSPIASEPD--YILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVLLAAHH 432
           H SP+ S+P+    LK GD+ KI LGAHIDGF ++VA T VV E  V+G AADV+ AA  
Sbjct: 91  HLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGPAADVIAAASA 150

Query: 433 ASEA 444
           A +A
Sbjct: 151 ALKA 154



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = +2

Query: 515 YGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKE 622
           YGCKP+ GMLSHQ ++  IDG+K +I NPS++QR E
Sbjct: 179 YGCKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSE 214


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 30/73 (41%), Positives = 47/73 (64%)
 Frame = +2

Query: 53  TKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFST 232
           +KY+ AG +V++   QV ++CVP AS REI  +GD L+ E  + ++K ++  +KGIA  T
Sbjct: 19  SKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKSQR-FEKGIAEPT 77

Query: 233 CVSVNNCIVTFRP 271
            + VNNC   + P
Sbjct: 78  SICVNNCAYNYAP 90



 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
 Frame = +1

Query: 181 QGFQKGERLQERHCIFNMRFCEQLHCHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVV 360
           Q F+KG       C+ N  +            ++  Y L+ GD+ KI +G H DG+ A++
Sbjct: 67  QRFEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALI 126

Query: 361 AHTVVV------GESEVSGRAADVLLAAHHASEAL 447
           +HT+VV      G     G  AD + AAH+AS+A+
Sbjct: 127 SHTIVVTPPPQPGMGPYIGPGADAICAAHYASKAV 161


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +1

Query: 253 HC--HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
           HC  H++P A +   ILK+ D+ K+D+G H++G I   A T+
Sbjct: 175 HCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNGRIVDSAFTM 215


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 114 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 209
           AF T +Q  Y N   NLY+   ++ S  R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 582 FSPSIRNCFSWCESIPSIGLQPYSALFSEWLQ*LHSSQYQASGDEE 445
           + PS+R  F+    IPS  L+ Y   + EW   +    +QAS + E
Sbjct: 125 YHPSLRPYFTILPLIPSDFLEHYIEGYFEWFHPVFPFIHQASFNSE 170


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 372 YCMSYNSYKSINVSTKIYLG*ISF 301
           YC    +YKS+ + T +Y+G   F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 408 CSTSRDFTFTHNYCMSYNSYKSINVST 328
           C  S  +T + N C +Y +  SIN  T
Sbjct: 46  CKGSTSYTISFNKCQAYPNINSINALT 72


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 163 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 59
           K + KF+   C  +++A C+D L  S H   C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 364 HTVVVGESEVSGRAADVLLAAHHASEAL 447
           H VV+G S + GR   +LL   +A+  L
Sbjct: 163 HAVVIGRSNIVGRPMSILLEKANATVTL 190


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 515 YGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKQH 637
           Y   P+  ML  QLK F+       +  P + Q+++ ++QH
Sbjct: 128 YKAAPLLKMLLQQLKNFK----NQALNQPPQQQQQQQQQQH 164


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 277 SQWAKSDNAVVHRNAC*KCNAFLGVFLLFENL 182
           S W K DN V  +N C   N ++  +  FE+L
Sbjct: 655 SSWEKGDNFVTKKNVCTVMNLWVQKY-FFEDL 685


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 125 ASAREICEFGDKLVLEETNKVFKKEKD 205
           ++ +E   FG+KL  E T K+   EKD
Sbjct: 865 SNLQEKINFGNKLAKEHTEKISSLEKD 891


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 26  KTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPD 124
           K I ++L V +   AG++++++ E    KC+P+
Sbjct: 23  KQIRQELAVAQ---AGELISKINENCFDKCIPE 52


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 280 EPDYILKKGDLAKIDLGAHIDGFIAVVAHTVV 375
           EP+Y+L  G+L+  +L   ID F      T V
Sbjct: 382 EPEYLLMYGNLSNEELVERIDAFYMNARRTYV 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,926
Number of Sequences: 5004
Number of extensions: 64570
Number of successful extensions: 204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)