Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00522
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 60 2e-09
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 33 0.17
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 31 1.2
05_01_0030 + 195663-196691 30 2.1
07_03_0933 + 22731588-22732094,22732788-22733786 29 4.8
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 29 4.8
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 28 6.4
07_03_0808 - 21668100-21669092 28 8.5
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 28 8.5
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889... 28 8.5
01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668... 28 8.5
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Frame = +1
Query: 292 ILKKGD-LAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVLLAAHHASE 441
I +KGD + D+G HIDGFIAVVAHT V+ + V+G+AADVL AA+ A+E
Sbjct: 51 ICEKGDSYIRDDMGCHIDGFIAVVAHTHVIHDGAVTGKAADVLAAANTAAE 101
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +2
Query: 14 KEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEE 175
+E E ++ VVTKYK A I+N L+ V++ C P A +ICE GD + ++
Sbjct: 9 EEKELDLSSSDVVTKYKDAADIINNALKLVVSLCKPKAKIVDICEKGDSYIRDD 62
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 509 AEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRK 619
A Y CK +EG+LSHQLKQF IDG K ++ + S A K
Sbjct: 125 AAYDCKIVEGVLSHQLKQFVIDGNK-VVLSVSNADTK 160
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 444 ALRLLKPGTENYAVTEAIQKI 506
ALRL++PG +N VTEAIQK+
Sbjct: 103 ALRLVRPGKKNKDVTEAIQKV 123
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 631 ATLEKYEVYAMDVLISTGEAVGREMD 708
A E+ EVYA+D++ STGE + +D
Sbjct: 164 AEFEENEVYAIDIVTSTGEGKPKLLD 189
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 259 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
H++P + + +L+ D+ K+D G HIDG+I A TV
Sbjct: 305 HWTPNSGDKT-VLQYDDVMKLDFGTHIDGYIVDCAFTV 341
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 259 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
H++P + +L+ D+ K+D G HI+G+I A TV
Sbjct: 249 HWTPNGGDKT-VLQYDDVMKLDFGTHINGYIVDSAFTV 285
>05_01_0030 + 195663-196691
Length = 342
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = -3
Query: 273 NGRKVTMQLFTETHVENAMP-FLESFSFLKTLLVSSNTSLS---PNSHISLADASGTHFA 106
+GR V++ +F +T++ A+P + + + L+TLL+ SLS P+S +L D + +
Sbjct: 76 SGRVVSLSVFQDTNLTGAIPDAIANLTHLRTLLLHHLPSLSGPIPDSLAALTDLTHLTIS 135
Query: 105 MTCSRTRFTICPANLYLVTTKSSAIVFSTSFSLVP 1
T ANL +T + F++ L+P
Sbjct: 136 WTAVSGPVPSFLANLTSLTMLD--LSFNSLTGLIP 168
>07_03_0933 + 22731588-22732094,22732788-22733786
Length = 501
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 286 DYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVLLAAH 429
+Y K G+ +DL +D I +A V++G+ ADV+ + H
Sbjct: 170 EYFAKWGEQGTVDLKRELDLLILTIASRVLLGKEVRETMFADVVASFH 217
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 648 ILFKCCFSCSLRCASDGFCIILFSPSIRN-CFSWC 547
I++ CCF + C LF PS RN C S C
Sbjct: 605 IIYVCCFVMGFGPIPNVLCSELFPPSCRNRCMSIC 639
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 364 HTVVVGESEVSGRAADVLLAAHHASEAL 447
H V+G S+V G +LL HHA+ ++
Sbjct: 258 HVTVIGRSKVVGLPTSLLLQRHHATVSI 285
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 168 NTSLSPNSHISLADASGTHFAMTCSRTRFTICPA 67
+ S P+S S + A+G F TC TR++ P+
Sbjct: 172 SASPRPSSPESFSSATGARFRSTCFSTRYSAIPS 205
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 292 ILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGR 402
++ +LA DLG +DG +AV A V+ ++E R
Sbjct: 447 VVPDDNLAAGDLGDELDGIVAVTADAEVLDDAERGAR 483
>01_07_0264 -
42388455-42388565,42388656-42388688,42388792-42388905,
42389011-42389100,42389173-42389268,42389363-42389404,
42389498-42389608,42392258-42392440,42392518-42392961
Length = 407
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 205 LQERHCIFNMRFCEQLHCHFSPIASEP-DYILKKGDLAK 318
++ERH + +RFC+ L+ F +P +Y +G+L K
Sbjct: 135 VKERHARYRIRFCKMLNKEFEDTMKDPAEY--SRGELLK 171
>01_06_1767 +
39766350-39766508,39766602-39766654,39766763-39766829,
39766929-39766984,39767287-39767791,39767981-39768069,
39768678-39768768,39769052-39769177,39769256-39769513,
39769748-39770029
Length = 561
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 713 LVSISRPTASPVDIRTSIAYTS-YFSSVAFHVLYAVLLMD 597
L +S+P+A VD+ S+ Y S + S F VL + LL D
Sbjct: 315 LAKVSKPSAEKVDVAKSLRYISTTWKSQEFLVLGSQLLTD 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,641
Number of Sequences: 37544
Number of extensions: 386083
Number of successful extensions: 1066
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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