Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00522
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0) 114 6e-26
SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14) 35 0.057
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 28 6.5
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5) 28 8.6
>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
Length = 465
Score = 114 bits (275), Expect = 6e-26
Identities = 53/89 (59%), Positives = 68/89 (76%)
Frame = +2
Query: 8 SEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKV 187
S +E E TIAED+VVTKYK+AG + NR+L ++I +AR +CE GD L+LEET+KV
Sbjct: 8 SGEEEEPTIAEDVVVTKYKMAGDMANRILLKLIEAANAGTTARTLCEKGDALILEETDKV 67
Query: 188 FKKEKDSKKGIAFSTCVSVNNCIVTFRPL 274
+KKEK+ KKGIAF TC+SVNNC+ F PL
Sbjct: 68 YKKEKELKKGIAFPTCISVNNCVCHFSPL 96
Score = 92.3 bits (219), Expect = 4e-19
Identities = 44/65 (67%), Positives = 51/65 (78%), Gaps = 3/65 (4%)
Frame = +1
Query: 256 CHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVG---ESEVSGRAADVLLAA 426
CHFSP+ SEPD L GDL KID G HIDGFIAV+ HT+VVG E++V+GR ADVLLAA
Sbjct: 91 CHFSPLLSEPDITLNDGDLVKIDFGVHIDGFIAVIGHTIVVGCSKENKVTGRKADVLLAA 150
Query: 427 HHASE 441
+ ASE
Sbjct: 151 YLASE 155
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +2
Query: 515 YGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEK 631
+ CKPIEGMLSHQLK+ IDGEK+IIQNP+E QRK+H K
Sbjct: 181 FKCKPIEGMLSHQLKRNVIDGEKAIIQNPNEQQRKDHSK 219
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 628 KATLEKYEVYAMDVLISTGEAVGREMDT 711
K +EVY +DVL+STG+ +E DT
Sbjct: 219 KCEFAVHEVYGVDVLVSTGDGKTKEKDT 246
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 444 ALRLLKPGTENYAVTEAIQKI 506
A R++KPG EN VTE +QK+
Sbjct: 157 AQRMVKPGAENSTVTELVQKV 177
>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
Length = 708
Score = 35.1 bits (77), Expect = 0.057
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 241 CEQLHC--HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
C HC H++P A + +L D+ KID G HI+G I A TV
Sbjct: 8 CSLNHCAAHYTPNAGDKT-VLSYDDVCKIDFGTHINGRIVDCAFTV 52
Score = 35.1 bits (77), Expect = 0.057
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 241 CEQLHC--HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
C HC H++P A + +L D+ KID G HI+G I A TV
Sbjct: 114 CSLNHCAAHYTPNAGDKT-VLSYDDVCKIDFGTHINGRIVDCAFTV 158
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +2
Query: 140 ICEFGDKLVLEETNKVFKKEKDSK--KGIAFSTCVSVNNCIVTFRP 271
+C+ G+ ++ET + ++ E D K KG+AF T S+N+C + P
Sbjct: 82 LCDVGE--AIQETMESYEVELDGKTYKGLAFPTGCSLNHCAAHYTP 125
>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 963
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = -2
Query: 439 H*HDELPT------KHLQHVQRLHFHPQLLYELQQL*IHQCEHQDLSWLNLLFSE-CNPV 281
H ++ +PT + + +VQ+L F + ++ L H+C H+DL+ N+L P+
Sbjct: 883 HSYENIPTVSTEQPEEISYVQKLKFAHGIAQGMRHLEKHKCVHRDLAARNVLLGRGLEPI 942
Query: 280 RSQWAKS 260
S + S
Sbjct: 943 VSDFGLS 949
>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = -3
Query: 264 KVTMQLFTETHVENAMPFLESFSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTR 85
+V + +FTE + +++++ +K +L + + LS NS +++ AS TH C R+
Sbjct: 414 EVVVVIFTEGRRDTFRFAIDTWASVKEVLELTLSCLS-NSDVNIEHASTTHVLKICGRSE 472
Query: 84 F 82
+
Sbjct: 473 Y 473
>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
Length = 1558
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 125 ASAREICEFGDKLVLEETNKVFKKEKDSKKG 217
A E+ E G K +LEE + F+KE + ++G
Sbjct: 877 AMKNELKEMGKKQILEEKERKFRKEMELQEG 907
>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
Length = 238
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 237 THVENAMPFLESFSFLKTLLVSSNTSLSP 151
TH ++ + F E+F+FL++L ++ T P
Sbjct: 147 THQDDILAFRENFAFLRSLYLTDGTDTPP 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,491,954
Number of Sequences: 59808
Number of extensions: 464551
Number of successful extensions: 1538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -