Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00522
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 99 4e-21
AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical ... 34 0.088
AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a... 31 1.1
AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal... 31 1.1
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 30 1.4
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 30 1.4
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 30 1.4
Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical ... 30 1.9
AF067613-5|AAN73864.1| 266|Caenorhabditis elegans Hypothetical ... 29 2.5
AF024499-2|AAT48621.1| 576|Caenorhabditis elegans Hypothetical ... 29 3.3
AF024499-1|AAT48620.1| 941|Caenorhabditis elegans Hypothetical ... 29 3.3
Z50044-6|CAA90358.1| 223|Caenorhabditis elegans Hypothetical pr... 28 5.8
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 28 7.6
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/91 (47%), Positives = 65/91 (71%)
Frame = +2
Query: 8 SEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKV 187
S + T+A D VVTKY++A +I N VL++V+A A A ++C+ GDKL+LE+T K+
Sbjct: 15 SHTHEDYTLANDAVVTKYQVAAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKL 74
Query: 188 FKKEKDSKKGIAFSTCVSVNNCIVTFRPLRA 280
+KKEK+ KGIA TC+S++NCI + PL++
Sbjct: 75 YKKEKNFTKGIAMPTCISIDNCICHYTPLKS 105
Score = 77.8 bits (183), Expect = 7e-15
Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 11/163 (6%)
Frame = +1
Query: 256 CHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVG---ESEVSGRAADVLLAA 426
CH++P+ SE +LK G + K+DLG HIDG IA AHTVVVG +++V+G+ AD+L
Sbjct: 98 CHYTPLKSEAPVVLKNGQVVKVDLGTHIDGLIATAAHTVVVGASKDNKVTGKLADLLRGT 157
Query: 427 HHASEALFVS*SLVLRTMQSLKPFRK*G*IWL*AN*GYALTPTEAVPY*WREEYY---TK 597
H A E S K K + LTP E + E K
Sbjct: 158 HDALEIAIRSLRPDTENTTITKNIDK-------TAAEFGLTPIENMLSHQLERNEIDGEK 210
Query: 598 SIRSTA*RT*KATLE-----KYEVYAMDVLISTGEAVGREMDT 711
I + K +E K+E YA+D+L STG+ ++MDT
Sbjct: 211 KIIQNSGEKQKGEIEKIKIDKHEAYAIDILFSTGKGQPKDMDT 253
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +2
Query: 509 AEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEK 631
AE+G PIE MLSHQL++ IDGEK IIQN E Q+ E EK
Sbjct: 186 AEFGLTPIENMLSHQLERNEIDGEKKIIQNSGEKQKGEIEK 226
>AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical
protein Y116A8A.9 protein.
Length = 444
Score = 34.3 bits (75), Expect = 0.088
Identities = 24/89 (26%), Positives = 45/89 (50%)
Frame = +2
Query: 5 TSEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNK 184
++E++ I+ + V Y+ + + +V + V + P + EICE LE T++
Sbjct: 115 SNEEKKALDISYEEVWQDYRRSAEAHRQVRKYVKSWIKPGMTMIEICER-----LETTSR 169
Query: 185 VFKKEKDSKKGIAFSTCVSVNNCIVTFRP 271
KE+ + G+AF T S+N+C + P
Sbjct: 170 RLIKEQGLEAGLAFPTGCSLNHCAAHYTP 198
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 241 CEQLHC--HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
C HC H++P A + +L+ GD+ KID G H+ G + A TV
Sbjct: 187 CSLNHCAAHYTPNAGDTT-VLQYGDVCKIDYGIHVRGRLIDSAFTV 231
>AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a
protein.
Length = 658
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 244 EQLHCHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADV 414
+QLH I S+ ++ + + D+G H+ F +AH GE V R A V
Sbjct: 195 KQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVFFFFREIAHDNSFGERIVHSRVARV 251
>AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal
protein 20, isoform a protein.
Length = 658
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 244 EQLHCHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADV 414
+QLH I S+ ++ + + D+G H+ F +AH GE V R A V
Sbjct: 195 KQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVFFFFREIAHDNSFGERIVHSRVARV 251
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 201 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 64
F L T+ N +LSP S LA AS + + TC T+ P N
Sbjct: 372 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 414
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 201 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 64
F L T+ N +LSP S LA AS + + TC T+ P N
Sbjct: 372 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 414
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 201 FSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPAN 64
F L T+ N +LSP S LA AS + + TC T+ P N
Sbjct: 400 FGLLSTIWSGGNMNLSPGS---LASASASPTSSTCDHNDHTLVPIN 442
>Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical
protein W08E3.3 protein.
Length = 395
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 167 LEETNKVFKKEKDSKKGIAFSTCVSVNNCIVTFRPLR 277
L++ K+F + D K I + T V V C+ +P+R
Sbjct: 163 LDKVEKLFTRANDKTKKIEYDTLVRVKKCLEEKKPVR 199
>AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical
protein F13C5.2 protein.
Length = 374
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 361 AHTVVVGESEVSGRAADVLLAAHHA 435
AH + +GESE++G AAD HA
Sbjct: 350 AHPIHIGESEIAGHAADSTTGESHA 374
>AF067613-5|AAN73864.1| 266|Caenorhabditis elegans Hypothetical
protein F56D6.6 protein.
Length = 266
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/87 (18%), Positives = 44/87 (50%)
Frame = +2
Query: 374 LWVKVKSLDVLQMFCWQLIMLVKRSSSPEAWY*ELCSH*SHSENKAEYGCKPIEGMLSHQ 553
+W+ + + Q+ C +I +++ S +P+A + + S ++ KA + E + +
Sbjct: 92 VWIVQIMMIIPQLVCLSMIFILETSQAPDAAALQKTFNNSSAQMKANFDKNAAESKENFE 151
Query: 554 LKQFRIDGEKSIIQNPSEAQRKEHEKQ 634
K+ ++ + + + +E + KE +K+
Sbjct: 152 KKKDEMEKDFNKTKEENEKKAKEDKKK 178
>AF024499-2|AAT48621.1| 576|Caenorhabditis elegans Hypothetical
protein F42G2.4b protein.
Length = 576
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 500 ENKAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNP-SEAQRKEHEKQHLKSMK 652
EN K +EG+L H + + + + I++N E + ++ H+KS++
Sbjct: 104 ENFTRIAFKDLEGLLKHAITELSLYNNRDILENSFFEEALRTNKPVHIKSLR 155
>AF024499-1|AAT48620.1| 941|Caenorhabditis elegans Hypothetical
protein F42G2.4a protein.
Length = 941
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 500 ENKAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNP-SEAQRKEHEKQHLKSMK 652
EN K +EG+L H + + + + I++N E + ++ H+KS++
Sbjct: 104 ENFTRIAFKDLEGLLKHAITELSLYNNRDILENSFFEEALRTNKPVHIKSLR 155
>Z50044-6|CAA90358.1| 223|Caenorhabditis elegans Hypothetical
protein F22B5.6 protein.
Length = 223
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 180 LVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPANLYLVTTKSSAIVFSTSFS 10
++S N S I +A+ THF +TC T F +L +V I+F T F+
Sbjct: 57 IISWNMLNSSRGKIVNENATNTHFGLTCVTTAFLCILTSLIIVD-----ILFKTHFT 108
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 300 FQNVIRFARNGRKVTMQLFTETHVENAMPFLES 202
+ + F NGR+VT+++ E+ +EN+ PF +S
Sbjct: 212 YTKMTTFLLNGREVTLEILLESTLENS-PFRQS 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,920,029
Number of Sequences: 27780
Number of extensions: 363384
Number of successful extensions: 1270
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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