Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00522
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51800.2 68416.m05681 metallopeptidase M24 family protein sim... 85 6e-17
At3g51800.1 68416.m05680 metallopeptidase M24 family protein sim... 85 6e-17
At5g58890.1 68418.m07378 MADS-box family protein various predict... 31 0.57
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 31 0.57
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 31 0.57
At2g44180.1 68415.m05496 methionyl aminopeptidase, putative / me... 31 0.57
At5g28650.1 68418.m03508 WRKY family transcription factor DNA-bi... 29 2.3
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 29 2.3
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 29 4.0
At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative / ... 29 4.0
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 7.1
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 7.1
At1g65620.1 68414.m07443 LOB domain protein 6 / lateral organ bo... 28 7.1
At5g55690.1 68418.m06943 MADS-box protein (AGL47) 27 9.3
At4g12360.1 68417.m01954 protease inhibitor/seed storage/lipid t... 27 9.3
>At3g51800.2 68416.m05681 metallopeptidase M24 family protein
similar to SP|P50580 Proliferation-associated protein
2G4 {Mus musculus}; contains Pfam profile PF00557:
metallopeptidase family M24
Length = 401
Score = 84.6 bits (200), Expect = 6e-17
Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Frame = +2
Query: 11 EKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVF 190
EKE+ T E VVTKYK A +IVN+ L+ V+A+C P A +ICE GD + E+T ++
Sbjct: 9 EKELSLTSPE--VVTKYKSAAEIVNKALQVVLAECKPKAKIVDICEKGDSFIKEQTASMY 66
Query: 191 KKEKDS-KKGIAFSTCVSVNNCIVTFRPLRAN 283
K K ++G+AF TC+SVNN + F PL ++
Sbjct: 67 KNSKKKIERGVAFPTCISVNNTVGHFSPLASD 98
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/61 (55%), Positives = 48/61 (78%)
Frame = +1
Query: 259 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVLLAAHHAS 438
HFSP+AS+ + +L+ GD+ KID+G HIDGFIA+V HT V+ E +SGR ADV+ AA+ A+
Sbjct: 91 HFSPLASD-ESVLEDGDMVKIDMGCHIDGFIALVGHTHVLQEGPLSGRKADVIAAANTAA 149
Query: 439 E 441
+
Sbjct: 150 D 150
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2
Query: 509 AEYGCKPIEGMLSHQLKQFRIDGEKSII 592
A Y CK +EG+LSHQLKQ IDG K ++
Sbjct: 174 AAYDCKIVEGVLSHQLKQHVIDGNKVVL 201
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 444 ALRLLKPGTENYAVTEAIQKI 506
ALRL++PG +N VTEAIQK+
Sbjct: 152 ALRLVRPGKKNTDVTEAIQKV 172
>At3g51800.1 68416.m05680 metallopeptidase M24 family protein
similar to SP|P50580 Proliferation-associated protein
2G4 {Mus musculus}; contains Pfam profile PF00557:
metallopeptidase family M24
Length = 392
Score = 84.6 bits (200), Expect = 6e-17
Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Frame = +2
Query: 11 EKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVF 190
EKE+ T E VVTKYK A +IVN+ L+ V+A+C P A +ICE GD + E+T ++
Sbjct: 9 EKELSLTSPE--VVTKYKSAAEIVNKALQVVLAECKPKAKIVDICEKGDSFIKEQTASMY 66
Query: 191 KKEKDS-KKGIAFSTCVSVNNCIVTFRPLRAN 283
K K ++G+AF TC+SVNN + F PL ++
Sbjct: 67 KNSKKKIERGVAFPTCISVNNTVGHFSPLASD 98
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/61 (55%), Positives = 48/61 (78%)
Frame = +1
Query: 259 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVLLAAHHAS 438
HFSP+AS+ + +L+ GD+ KID+G HIDGFIA+V HT V+ E +SGR ADV+ AA+ A+
Sbjct: 91 HFSPLASD-ESVLEDGDMVKIDMGCHIDGFIALVGHTHVLQEGPLSGRKADVIAAANTAA 149
Query: 439 E 441
+
Sbjct: 150 D 150
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2
Query: 509 AEYGCKPIEGMLSHQLKQFRIDGEKSII 592
A Y CK +EG+LSHQLKQ IDG K ++
Sbjct: 174 AAYDCKIVEGVLSHQLKQHVIDGNKVVL 201
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 444 ALRLLKPGTENYAVTEAIQKI 506
ALRL++PG +N VTEAIQK+
Sbjct: 152 ALRLVRPGKKNTDVTEAIQKV 172
>At5g58890.1 68418.m07378 MADS-box family protein various predicted
proteins, Oryza sativa and Arabidopsis thaliana
Length = 294
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 188 FKKEKDS--KKGIAFSTCVSVNNCIVTFRPLRANRITF*KKEI*PR 319
+KK K S KK FST V C++ + P +A + + EI P+
Sbjct: 21 YKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWPK 66
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 259 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
H++P + + +L+ D+ K+D G HIDG I A TV
Sbjct: 192 HWTPNSGDKT-VLQYDDVMKLDFGTHIDGHIIDCAFTV 228
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 259 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
H++P + + +L+ D+ K+D G HIDG I A TV
Sbjct: 192 HWTPNSGDKT-VLQYDDVMKLDFGTHIDGHIIDCAFTV 228
>At2g44180.1 68415.m05496 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to SP|P50579 Methionine aminopeptidase
2 (EC 3.4.11.18) (MetAP 2) {Homo sapiens}; contains Pfam
profile PF00557: metallopeptidase family M24
Length = 441
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 259 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
H++P + + +L+ D+ K+D G HIDG I A TV
Sbjct: 194 HWTPNSGDKT-VLQYDDVMKLDFGTHIDGHIVDSAFTV 230
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +2
Query: 5 TSEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNK 184
TSE++ E + + + A ++ +V + + + P ++CE LE T +
Sbjct: 114 TSEEKREMERLQKPIYNSLRQAAEVHRQVRKYMRSILKPGMLMIDLCE-----TLENTVR 168
Query: 185 VFKKEKDSKKGIAFSTCVSVNNCIVTFRP 271
E + GIAF T S+NN + P
Sbjct: 169 KLISENGLQAGIAFPTGCSLNNVAAHWTP 197
>At5g28650.1 68418.m03508 WRKY family transcription factor
DNA-binding protein WRKY3, parsley, PIR:S72445
Length = 330
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 287 SGSLAMGEK*QCSCSQKRMLKMQ 219
SGSL G K +C CS+KR L+++
Sbjct: 223 SGSLKCGSKSKCHCSKKRKLRVK 245
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 296 RM*SGSLAMGEK*QCSCSQKRMLKMQ 219
+M SGSL G + +C CS+KR L+++
Sbjct: 220 KMCSGSLKCGSRSKCHCSKKRKLRVK 245
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 325 LGAHIDGFIAVVAHTVVVGESEVSGRAADVLLAAHHAS 438
+GA + + + VA T ++ + + +A +VLL AH A+
Sbjct: 304 VGARYNSYCSNVARTYLIDATSLQSKAYEVLLKAHEAA 341
>At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative /
shikimate dehydrogenase, putative similar to
dehydroquinate dehydratase/shikimate dehydrogenase
[Nicotiana tabacum][GI:535771], dehydroquinate
dehydratase/shikimate:NADP oxidoreductase [Lycopersicon
esculentum][GI:3169883]
Length = 603
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 262 SDNAVVHRNAC*KCNAFLGVF--LLFENLVSLLQYKFIAKFTYFSC 131
S + +VH A K F GV+ LL +NLVS LQ + F FSC
Sbjct: 336 SKSPIVHNQAF-KSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSC 380
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 530 IEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKQHL 640
IEG++ + ++Q++ID +I QR HE++ +
Sbjct: 1470 IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRM 1506
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 530 IEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKQHL 640
IEG++ + ++Q++ID +I QR HE++ +
Sbjct: 1469 IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRM 1505
>At1g65620.1 68414.m07443 LOB domain protein 6 / lateral organ
boundaries domain protein 6 (LBD6) / asymmetric leaves2
(AS2) identical to SP|O04479 LOB domain protein 6
(ASYMMETRIC LEAVES2) {Arabidopsis thaliana}
Length = 199
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 515 YGCKPIEGMLSHQLKQFRID 574
YGC + +L HQL+Q +ID
Sbjct: 82 YGCVGVISLLQHQLRQLQID 101
>At5g55690.1 68418.m06943 MADS-box protein (AGL47)
Length = 277
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 188 FKKEKDS--KKGIAFSTCVSVNNCIVTFRPLRANRITF*KKEI*PR 319
+KK K KK FST V+ C++ + P RA + E+ P+
Sbjct: 21 YKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVMEPELWPK 66
>At4g12360.1 68417.m01954 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 161
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 192 LKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTRFTICPA 67
L TLLV++ T HI LA + + AM C+ PA
Sbjct: 11 LATLLVAATTVSGQGPHIPLAPSPSVNEAMNCAAGLAVCLPA 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,087
Number of Sequences: 28952
Number of extensions: 326588
Number of successful extensions: 1014
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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