Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00521
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   1.1  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   2.5  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   3.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.8  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   5.8  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   5.8  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   7.7  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 193 VLSLEACKMFCDDYGLLWPKPRSRQIWVTSSPRLI*TPSTFRSPSKERAT 342
           V +L + KM+ DD   L+P+  S +   T+SP +  T S  RS S +  T
Sbjct: 514 VANLGSLKMYNDDRNFLYPRETSNKEIETTSPSIF-TLSFERSSSDDNDT 562


>SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 207  SLQDV--L*RLWSPLAETTIETNLGNFLSKINMNTIDIQITKQGKSDDLLTAAADRFKTL 380
            SL+D+  L  L  P  +T +   + N LS + M    + +  Q     L  +  + F TL
Sbjct: 804  SLEDIDSLKALELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGLDGSEGEIFSTL 863

Query: 381  VSSSVPKGF 407
            V  +  +GF
Sbjct: 864  VEDNTREGF 872


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 231 LWSPLAETTIETNLGNFLSKINMNTIDI-QITKQGKSDDLLTAAAD 365
           L  PLA+T+I      +L  +N+NTI + Q+      D+ ++A  D
Sbjct: 60  LVDPLADTSICKRDLPYLQGLNINTIRVYQVDNSANHDECMSALQD 105


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 560  KSFHVW*RSLYHSTLMKLELVALIHVQGEFSDIRIVID 447
            K   V+  ++ H  L K +LVA IHV+G  +   IV D
Sbjct: 3143 KILGVYTLAVVHPVLRKQQLVAFIHVKGISASHLIVHD 3180


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 365 VGSRCEEVVALSLLGDLNVDGVHI 294
           +G  C+ +   SLL D N++G H+
Sbjct: 416 LGKTCQTIAFFSLLMDKNINGPHL 439


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 261 RSWFRPEETIIVTEHLAGFQTEDRLLILRLVPDLRASIVFARPSPQ 124
           R+W  P E ++    LA F T  R+L   + P   +++VF    P+
Sbjct: 17  RNW--PREHLVHRSLLASFSTTQRVLKCSVGPFRTSNVVFKSKEPK 60


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 127 WRWTCENNRCTKIRNEPENKEPVLSL 204
           W W C N RC       +N E  L+L
Sbjct: 156 WGWLCVNTRCLYYDTGSKNTEDHLTL 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,412
Number of Sequences: 5004
Number of extensions: 58568
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)