Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00521
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              30   1.5  
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   4.6  
SB_49808| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   6.1  
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      28   8.0  

>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 58  ICIYSVFIIIECGIPTAAEEHSLWRWTCENNRCTKIRNEPENK 186
           IC   +  ++ C I ++ + H+L+RW   N R T I N   +K
Sbjct: 12  ICTILLLFLLAC-IKSSCDAHALYRWDSHNER-TNIENSDASK 52


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 255  TIETNLGNFLSK-INMNTIDIQITKQGKSDDLLTAAADRFKTLVSSSVPKG 404
            T+E N  N L++ + ++ +D+QI K+  S  + +    + K L S  VPKG
Sbjct: 1214 TLELNNMNTLTEYVILSVVDLQINKESSSSYVESWDGHKVKLLCSVRVPKG 1264


>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 282 LSKINMNTIDIQITKQGKSDDLLTAAADRFKTLVSSSVPKG 404
           ++  N N +DI I K+     +  A  DR++ L+++S P G
Sbjct: 503 MNNFNQNALDIAIKKEKTEVAMAMAENDRWRELMNTSSPGG 543


>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1358

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +3

Query: 198  QSGSLQDVL*RLWSPLAETTIETNLGNFLSKINMN-TIDIQITKQGKSDDLLTAAADRFK 374
            QS + Q+V   + SP   TT +  L       + N ++  +++  GK    +TAA D F+
Sbjct: 978  QSATRQEVTGSVTSPEGTTTQQVTLPPCNQTCHQNLSVFGEMSLTGKVTVNVTAANDDFR 1037

Query: 375  TLVSSSVPKGF-SAKAAGKSVTVYLVN 452
             + +S VP+ F  A A G     ++ N
Sbjct: 1038 GVRASVVPREFYEASALGDRRDAFIGN 1064


>SB_49808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +3

Query: 198 QSGSLQDVL*RLWSPLAETTIETNLGNFLSKINMN-TIDIQITKQGKSDDLLTAAADRFK 374
           QS +LQ V   + SP   TT +  L       + N ++  +++  GK    +TAA D F+
Sbjct: 19  QSATLQVVTGSVTSPEGTTTQQVTLPPCNQTCHQNLSVFGEMSLTGKLTVNVTAANDDFR 78

Query: 375 TLVSSSVPKGF-SAKAAG 425
            + +S VP+ F  A A G
Sbjct: 79  GVRASVVPREFYEASALG 96


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 101  RRQPKSTHCGDGRAKTIDARRSGTSRRIRSLSSVWKPARCSVTIMVSSGRNHDRDKSG*L 280
            R Q    +  +G +  +++  S TSR+I    +V KPA+ S  +     R   R KS  L
Sbjct: 1504 REQTYDKNARNGFSSDVNSASSITSRKIDPYPTVPKPAKDSAVVSSVYKRTGARPKSRPL 1563

Query: 281  P 283
            P
Sbjct: 1564 P 1564


>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
 Frame = +1

Query: 91  CGIPTAAEEHSLWRWTCENNRCTKIRNEPENKEPVLSLEACKMFCDDYGLLWPKPRSRQI 270
           C +     E     WT +  R       P+ +E  +S +      + Y   W     R  
Sbjct: 212 CELDYPTTERCPANWTTQVQRDALPTGLPKYRE--MSCQLDYPTTERYPANWTTQVQRDA 269

Query: 271 WVTSSPRLI*TPSTFRSPSKERA----TTSSQR--LPTGLRHWFPVPC 396
             T  P     P     PS ER     TT  QR  LPTGL  +  +PC
Sbjct: 270 LRTGLPNYRERPCQLDYPSTERCPANWTTQLQRDTLPTGLPRYREMPC 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,771,151
Number of Sequences: 59808
Number of extensions: 473486
Number of successful extensions: 1154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)