Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00521
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55260.1 68416.m06137 glycosyl hydrolase family 20 protein si...    33   0.17 
At1g63780.1 68414.m07218 brix domain-containing protein contains...    28   5.0  
At5g57420.1 68418.m07173 auxin-responsive factor-related contain...    28   6.6  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    28   6.6  
At4g30720.1 68417.m04354 expressed protein hypothetical protein ...    27   8.7  
At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family pr...    27   8.7  

>At3g55260.1 68416.m06137 glycosyl hydrolase family 20 protein
           similar to beta-hexosaminidase A SP:P13723 from
           [Dictyostelium discoideum]
          Length = 541

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 539 ATIRGNSFFGVRHGLETLSQLIVYDDIRNNLLIVR 643
           ATI  N+ +G   GLET SQL  +D I  ++ I +
Sbjct: 140 ATIEANTVYGALRGLETFSQLCAFDYITKSVQIYK 174


>At1g63780.1 68414.m07218 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 294

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 340 TTSSQRLPTGLRHWFPVPCLKASRRRLQENQSQFI 444
           T   QR+   L+H FP P L A R     NQS +I
Sbjct: 196 TQMGQRVGNILKHIFPAPKLDAKRIVTFSNQSDYI 230


>At5g57420.1 68418.m07173 auxin-responsive factor-related contains
           weak similarity to Swiss-Prot:P33078 auxin-responsive
           protein IAA5 (Indoleacetic acid-induced protein 5)
           (Auxin-induced protein AUX2-27) [Arabidopsis thaliana]
          Length = 171

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 599 LIVYDDIRNNLLIVRDVTIKD 661
           LI Y+D+ N+LL+  D+T KD
Sbjct: 127 LIAYEDMENDLLLAGDLTWKD 147


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
            identical to SP|P34881 DNA (cytosine-5)-methyltransferase
            AthI (EC 2.1.1.37) {Arabidopsis thaliana}
          Length = 1534

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 276  YPDLSRSWFRPE---ETIIVTEHLAGFQTEDRLLILRLVP 166
            Y +++ SWF+ E    TI +T+H+     E  L+  +L+P
Sbjct: 1359 YKEVAVSWFQKEIRGNTIALTDHICKAMNELNLIRCKLIP 1398


>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
           Synechocystis sp. (strain PCC 6803),PIR2:S76076
          Length = 749

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/78 (28%), Positives = 30/78 (38%)
 Frame = -2

Query: 436 VTDFPAAFAEKPLGTELETSVLNLSAAAVRRSSLFPCLVI*MSMVFILILERKLPRFVSI 257
           VTDF      K   T L  S   L   +     LFP  +       I + E++LP F+S 
Sbjct: 608 VTDF---LQNKLSETPLPPSSYRLGVKSANLHELFPAHITEALRESISMFEKELPGFISE 664

Query: 256 VVSARGDHNRHRTSCRLP 203
                G   R  +  R+P
Sbjct: 665 EALLHGVETRTSSPVRIP 682


>At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 697

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 318 ITKQGKSDDLLTAAADRFKTLVSSSVPKGFSAKAAGKSVTVYLVND 455
           I K  K++ ++ A   R +      VP+  +AK AGK +  +L ++
Sbjct: 351 IRKHCKTNGIVLAGISRRRKSHDDVVPESLAAKGAGKLIAKFLTSE 396


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,977,901
Number of Sequences: 28952
Number of extensions: 323753
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)