Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00520
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    27   3.0  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    27   3.0  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    27   4.0  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.2  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.2  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1101

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 412  ELEEKRRLDSRNRYHQKLQKIRQKDRLKRDAKMS 513
            ++E +   D R +YH  L ++ Q  RL  D+K S
Sbjct: 1012 QIEREAYEDLRRKYHLTLARLAQMTRLNEDSKKS 1045


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 143 VSRLQQREIDRTSESIRKEEKNKHKIDGLK 232
           +S L++ +++R   + +K+EKN HK + LK
Sbjct: 82  ISELEKEKLERPLSN-KKKEKNDHKAESLK 110


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 372 IRTEARDHGPHVPRIRREKEAGFEKPLPSEAPEDQTEGSLEEGREDVD 515
           ++ +    G    + +R+K    +K +  E P+D+ +   EE  ED D
Sbjct: 6   LKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDAD 53


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 399 PHVPRIRREKEAGFEKPLPSEAPEDQTEGSLEEGREDVDPEL 524
           P  P  +  KEA   +  P E  E+  EG  EE  E+ + E+
Sbjct: 105 PPQPEEKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEI 146


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 213 CLF--FSSFRILSDVRSISRC*SRETTITCFHKTLHYLIVI 97
           C+F  FS +  +S  R+ISR  SR+        T++YL+ I
Sbjct: 537 CIFTSFSCYNCISGTRNISRQYSRDKFHYNQRTTIYYLVAI 577


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 354 DRWSIGIRTEARDHGPHVPRIRREKEAGFEKPLPSEAP--EDQTEGSLEE 497
           D +S    T++    P +P  R+  E   EKP P E+P  +D+T     E
Sbjct: 25  DAYSWSSSTDSAGEIPSLPTNRKILEKIAEKPPPFESPLEDDETPDQTNE 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,181
Number of Sequences: 5004
Number of extensions: 57525
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)