Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00520
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02990.2 68414.m00269 expressed protein similar to mature-par...    31   1.1  
At1g02990.1 68414.m00270 expressed protein similar to mature-par...    31   1.1  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    29   2.6  
At1g76720.1 68414.m08929 eukaryotic translation initiation facto...    29   2.6  
At3g58050.1 68416.m06471 expressed protein                             29   3.4  
At1g34750.1 68414.m04321 protein phosphatase 2C, putative / PP2C...    29   4.5  
At4g34730.1 68417.m04929 ribosome-binding factor A family protei...    28   6.0  
At3g54970.2 68416.m06097 expressed protein                             28   6.0  
At3g54970.1 68416.m06096 expressed protein                             28   6.0  
At1g78940.1 68414.m09203 protein kinase family protein contains ...    28   7.9  

>At1g02990.2 68414.m00269 expressed protein similar to
           mature-parasite-infected erythrocyte surface antigen
           (GI:160409) {Plasmodium falciparum}
          Length = 1238

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 128 KHVIVVSRLQQREIDRTSESIRKEEKNKHKIDG 226
           KH+I  S L + +   T +S+R+E KNKH ++G
Sbjct: 529 KHLIKPSDLNE-DRHTTKQSVRREVKNKHSLEG 560


>At1g02990.1 68414.m00270 expressed protein similar to
           mature-parasite-infected erythrocyte surface antigen
           (GI:160409) {Plasmodium falciparum}
          Length = 1069

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 128 KHVIVVSRLQQREIDRTSESIRKEEKNKHKIDG 226
           KH+I  S L + +   T +S+R+E KNKH ++G
Sbjct: 529 KHLIKPSDLNE-DRHTTKQSVRREVKNKHSLEG 560


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
            family protein / eIF-2 family protein similar to IF2
            protein [Drosophila melanogaster] GI:7108770; contains
            Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 621  KLIDGGQTTDSTAYFHVQTTKDEEVVSCVNSSELVTTVNTRLSPRP 758
            K+I+G  TT      + +  + +++V C     +VTT+   L+P P
Sbjct: 936  KVIEGHGTTIDVVLVNGELHEGDQIVVCGLQGPIVTTIRALLTPHP 981


>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
            family protein / eIF-2 family protein similar to
            SP|O60841 Translation initiation factor IF-2 {Homo
            sapiens}; contains Pfam profiles PF00009: Elongation
            factor Tu GTP binding domain, PF03144: Elongation factor
            Tu domain 2
          Length = 1201

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 621  KLIDGGQTTDSTAYFHVQTTKDEEVVSCVNSSELVTTVNTRLSPRP 758
            K+I+G  TT      + +  + +++V C     +VTT+   L+P P
Sbjct: 869  KVIEGHGTTIDVVLVNGELHEGDQIVVCGLQGPIVTTIRALLTPHP 914


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +1

Query: 271 KMSHHLVTVCMFCLLCAAHTCGSHVDIQTDGVLAYEPRLETTDHMSLELEEKRRLDSRNR 450
           + + H + VC+   L   H    HV  +   ++  E +++  +    E  E+     + R
Sbjct: 496 RQNAHSIFVCLTLKLLEQHL---HVACKE--IITLEKQVKLLEEEEKEKREEEERKEKKR 550

Query: 451 YHQKLQKIRQKDRLKRDAK 507
             ++ +K+R+K+RLK   K
Sbjct: 551 SKEREKKLRKKERLKEKDK 569


>At1g34750.1 68414.m04321 protein phosphatase 2C, putative / PP2C,
           putative similar to GB:AAD17805 from (Lotus japonicus)
           (Proc. Natl. Acad. Sci. U.S.A. 96 (4), 1738-1743 (1999))
          Length = 282

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 390 DHGPHVPRIRREKEAGFEKPLPSEAPEDQTEGSLEEGREDVDPEL 524
           DH PH  R+  E + GF   +P + P  +  G L   R   D  L
Sbjct: 164 DHEPHTERLSIEGKGGFVSNMPGDVP--RVNGQLAVSRAFGDKSL 206


>At4g34730.1 68417.m04929 ribosome-binding factor A family protein
           contains PFam PF02033: Ribosome-binding factor A
          Length = 215

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 372 IRTEARDHGPHV----PRIRREKEAGFEKPLPSEAPEDQTEGSLEEGREDV 512
           I  EA + G  V     +I+ EK +G  K  PS++ ED  +  +++  ED+
Sbjct: 161 IEDEAMERGSRVIAILDKIKAEKGSGEGKTEPSDSTEDDQDWEVDDPDEDI 211


>At3g54970.2 68416.m06097 expressed protein
          Length = 304

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 444 KPLPSEAPEDQTEGSLEEGREDVDPELYVAQIFGMYGDAASMTMNLTGFNKMLEELDL 617
           +P+P  +  D+  GS+ E  + V     V +   +YG+  ++T+ +TG  + L  LD+
Sbjct: 80  QPVPGSSIYDRVNGSMSEALKSV----VVKESERLYGEELAVTVLVTGNVEKLNRLDV 133


>At3g54970.1 68416.m06096 expressed protein
          Length = 353

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 444 KPLPSEAPEDQTEGSLEEGREDVDPELYVAQIFGMYGDAASMTMNLTGFNKMLEELDL 617
           +P+P  +  D+  GS+ E  + V     V +   +YG+  ++T+ +TG  + L  LD+
Sbjct: 80  QPVPGSSIYDRVNGSMSEALKSV----VVKESERLYGEELAVTVLVTGNVEKLNRLDV 133


>At1g78940.1 68414.m09203 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 680

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 370 AYEPRLETTDHMSLELEEKRRLDSRNRYHQKLQKIRQKDRLKRDAKM 510
           A   R + T+   L  EE+RRL+      +    I +K+R K  A +
Sbjct: 278 ALSARQQATELQKLRTEEERRLEEAKSSEEAAMSIVEKERAKAKAAL 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,807
Number of Sequences: 28952
Number of extensions: 307015
Number of successful extensions: 901
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)