Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00519
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6HMM0 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  
UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE...    33   7.6  

>UniRef50_Q6HMM0 Cluster: Putative uncharacterized protein; n=1;
           Bacillus thuringiensis serovar konkukian|Rep: Putative
           uncharacterized protein - Bacillus thuringiensis subsp.
           konkukian
          Length = 78

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -2

Query: 292 EIRLCIYLPSFIFNLFSAPGFYDIAKGSTQ*SST 191
           EI+L IY    +F+ FSAPGF+D  +G  +  ST
Sbjct: 44  EIKLKIYEKIDVFDNFSAPGFFDFIEGVNEIKST 77


>UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE
           MCM FAMILY; n=1; Encephalitozoon cuniculi|Rep: DNA
           REPLICATION LICENSING FACTOR OF THE MCM FAMILY -
           Encephalitozoon cuniculi
          Length = 708

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -3

Query: 219 RKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQGVFFS 88
           RK L S+R  GD + IL+ G  G+ KS LLSF ++  E+G++ S
Sbjct: 348 RKELGSSRLRGDIN-ILLAGDPGISKSQLLSFIHRTSERGMYTS 390


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,180,823
Number of Sequences: 1657284
Number of extensions: 11533600
Number of successful extensions: 22145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22138
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)