Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00518
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    28   1.6  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            27   2.2  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    27   3.8  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    27   3.8  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    26   5.0  

>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 245 HPRDGECVSRRVLRLYDPPDVAGYFDTCVWPRHLYYRAQIEKDRCVKLLDATQQDSFEVV 424
           HP D     RRVLR+++    AGY      P  ++ R    +    +LL    Q+ ++ V
Sbjct: 77  HPED----PRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRV 132


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 356 AQIEKDRCVKLLDATQQDSFEVV 424
           A + +D+C++L D+TQ D  E++
Sbjct: 78  ATVSEDKCLRLWDSTQPDKIELL 100


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 248 PRDGECVSRRVLRLYDPPDVAGYFDTCVWPRHLYYRAQ 361
           PR    VS++ +R Y  P  AGY       R LYY  Q
Sbjct: 172 PRPPLPVSKKDIRYYTNPHFAGYLANVKNIRELYYGDQ 209


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 468 VAHRAHRVRASMSAMTTSNESCCVASSNF 382
           +AHR HR++  ++A        C+ ++NF
Sbjct: 408 LAHRPHRLKIDLNAKQWGATGVCILNANF 436


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 132 NRLEGTSTVAGTKFLVIEGFTVLNYKPIMEICDLRYY 242
           NRL  T+T+ G   +++EG   L  + I  + D+  +
Sbjct: 112 NRLPETNTLFGASIIILEGIFALYDEKIRSLLDVSVF 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,854
Number of Sequences: 5004
Number of extensions: 53264
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)