Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00518
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)                   30   1.8  
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)                    28   9.4  
SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)                  28   9.4  

>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
          Length = 1485

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 210  VYNLTP*NLQSPRTLYRLRWMFPPNGWHATCP 115
            +Y++    L SPR + +  W+FPP   H +CP
Sbjct: 986  IYDMQRRTLPSPRLVPKRYWLFPPPA-HCSCP 1016


>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 743

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -1

Query: 704 YPNMSLWTTDEIHIFLKTL*K-PIQRYNKF 618
           YP+++ W+  ++H F+ TL K  I+ Y+++
Sbjct: 131 YPSIASWSASDMHKFISTLAKLDIEEYDEY 160


>SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)
          Length = 130

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 405 CCVASSNFTHRSFSICAL*YKCRGHT 328
           CC   + FTH + S C L   CR H+
Sbjct: 36  CCTVRAVFTHHTRSACLLHCPCRIHS 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,828,983
Number of Sequences: 59808
Number of extensions: 428286
Number of successful extensions: 1011
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)