Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00518
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    27   0.14 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   1.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 626 CIAVLVSTKFSKKY--VFHRWSITTYWDILWQTVGTITMTLS 745
           C+  LV   FS  Y  + +RW  TT W  +W+++  +  T S
Sbjct: 92  CLVGLVVMPFSAIYEVLENRWLFTTDWCDVWRSLDVLFSTAS 133


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 344 LYYRAQIEKDRCVKLLDATQQDSFEVVMADI 436
           +Y+R Q+E     + ++A   D+ E  + DI
Sbjct: 698 MYFRRQVELSNMYRTMEANNYDTAEEAIRDI 728


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 626 CIAVLVSTKFSKKYVFHRWSITTYWDILWQTVGTITMTLS 745
           C+A+LV        +   WS  T    LW +   ++ T S
Sbjct: 89  CVALLVMPMALLYEISGNWSFGTIMCDLWVSFDVLSCTAS 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,080
Number of Sequences: 438
Number of extensions: 3881
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)