Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00517
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    64   3e-11
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    29   0.96 
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    28   1.7  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   2.2  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   5.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   5.1  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +1

Query: 157 IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKK 258
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R  K
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTK 42



 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 28/41 (68%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
 Frame = +2

Query: 401 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLIL-SRKA 520
           A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+  RKA
Sbjct: 90  ASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKA 130



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = +3

Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAA 383
           +RP V+ PT+RY+ KVRAGRGFTL E++AA
Sbjct: 54  IRPAVKPPTIRYNMKVRAGRGFTLEELKAA 83


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 493 SASYTVPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDERTSK 657
           SAS      KK  + E N ++ +  TQ +    PV++  PK  + P+T  E   K
Sbjct: 459 SASKVEEPSKK--RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSEDVKK 511


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 589  MPVQQPAPKSVARPITEDERTSKLIIP 669
            +P   PAP S+AR     +R+S  IIP
Sbjct: 974  IPALSPAPSSLARSSVSSQRSSTSIIP 1000


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -2

Query: 368  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSF-FILFC 240
            T   +STG+Y  M    +   W S   T    C TWSY  S+ +I  C
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDYITGC 1262


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 460 ANQCSKNKGIQSASYTVPKGKKVLKGEANEEERKLATQLR 579
           AN+   NK I +A  +V + K VLK +  EEER +A Q R
Sbjct: 616 ANKVDLNKIISAAMESVNQ-KNVLKAQKEEEER-IAQQKR 653


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 741 GFSAASFNLLARIPTSLAMERAPLRYD 661
           G S+A FN    +PT L  ER  L +D
Sbjct: 433 GLSSAVFNFNVALPTCLVKERDRLTFD 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,845
Number of Sequences: 5004
Number of extensions: 59117
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)