Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00517
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 66 2e-11
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 66 2e-11
02_04_0147 + 20194244-20195717,20195953-20195969 30 2.3
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 29 3.1
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361... 29 4.0
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 29 5.3
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +1
Query: 136 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKK 258
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R KK
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKK 41
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/44 (56%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Frame = +2
Query: 398 FARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLIL-SRKAKR 526
FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++ R+A++
Sbjct: 89 FAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARK 132
Score = 48.0 bits (109), Expect = 8e-06
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +3
Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAA 383
LRPIV+C T++Y+ K RAGRGFTL E++AA
Sbjct: 54 LRPIVQCQTLKYNMKSRAGRGFTLEELKAA 83
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 514 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDERTSK 657
+ +KV G++ EE ATQ++G MP+ + +SV +T+D + K
Sbjct: 129 RARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFK 177
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +1
Query: 136 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKK 258
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R KK
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKK 41
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/44 (54%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Frame = +2
Query: 398 FARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLIL-SRKAKR 526
+A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++ R+A++
Sbjct: 89 YAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARK 132
Score = 48.0 bits (109), Expect = 8e-06
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +3
Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAA 383
LRPIV+C T++Y+ K RAGRGFTL E++AA
Sbjct: 54 LRPIVQCQTLKYNMKSRAGRGFTLEELKAA 83
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 514 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 645
+ +KV G++ EE ATQ++G MP+ + +SV DE
Sbjct: 129 RARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDE 172
>02_04_0147 + 20194244-20195717,20195953-20195969
Length = 496
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 305 YRT*RPSCRTWSYGLSFF 252
Y T RP CR W + LSFF
Sbjct: 264 YHTARPGCRYWVFSLSFF 281
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 526 VLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDERTSKLI 663
+LK +A ER L RG + Q PA + V PI+ +E +K++
Sbjct: 196 ILKSKAMAFERMLFRATRGNMFFNQAPAGEPVTDPISGEEAKAKIL 241
>07_01_0480 +
3616123-3617506,3618033-3618166,3618578-3618818,
3618912-3619120,3619234-3619265,3619363-3619474,
3619609-3619890
Length = 797
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 556 VLLHWPHPSAPFCLSGQYKTRSVFL 482
VL HW H FC G YKT S F+
Sbjct: 45 VLGHW-HNYTDFCYGGDYKTTSAFV 68
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 508 VPKGKKVLKGEANEEERKLAT--QLRGPLMPVQQPAPKSVARPITEDERTSKLIIPERSS 681
+P L + +R++A G +P+Q P P S A P T + L++ RSS
Sbjct: 1 MPSSSPPLADDRAPMDRRMAQLGSTSGTGLPLQPPTPPSTAPPSTGGDELPALLLRRRSS 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,795,434
Number of Sequences: 37544
Number of extensions: 373620
Number of successful extensions: 879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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