Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00517
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 85 4e-17
SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 28 7.2
SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40) 28 7.2
SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39) 28 9.5
SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26) 28 9.5
SB_36164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 85.4 bits (202), Expect = 4e-17
Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 4/175 (2%)
Frame = +1
Query: 142 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRR---KQNRIKKLRP*LHVLQLGRYVL*CD 312
K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR +Q + K+ P V R ++ C
Sbjct: 4 KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAP-RPVAGSLRPIVRCP 62
Query: 313 AQLFGTILKYAPVEDSLFVKLGPQIEPSICPNDWNCCRSP*TQQVC*IIANQCSKNKGIQ 492
+ T ++ A +L I + P + + + K +
Sbjct: 63 TFKYNTKVR-AGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYK 121
Query: 493 SASYTVP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDERTS 654
S P K K +G++ + A QL+GP+MP+ Q + ARPITEDE+ S
Sbjct: 122 SKLIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVPIKARPITEDEKKS 176
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/43 (65%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Frame = +2
Query: 401 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLIL-SRKAKR 526
A TIGIAVD RR+N+S ESLQ NVQR+KEY+++LI+ RKA +
Sbjct: 91 APTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPRKANK 133
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +3
Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAA 383
LRPIVRCPT +Y+TKVRAGRGFTL E++AA
Sbjct: 55 LRPIVRCPTFKYNTKVRAGRGFTLDELKAA 84
>SB_37794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 750
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 472 SKNKGIQSASYTVPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITE--DE 645
+KNKG S + KG+KVL + + E R+ + ++ P+ + P +
Sbjct: 610 NKNKGGTSRGRVLSKGEKVLALQWSRESRQTERGIHQAKAYIEMKTPRQITLPSADFIKR 669
Query: 646 RTSKLIIPERSSLHCQTR 699
+ S+ +RS+L Q R
Sbjct: 670 QRSEREQCQRSNLKGQVR 687
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Frame = +1
Query: 385 IEPSICPN--DWNCCRSP*----TQQVC*IIANQCSKNKGIQSASYTVPKGKKVLK 534
+ PS CP +W C P ++VC N C G Q + + GK LK
Sbjct: 854 VYPSECPKYKEWGFCTDPKYDKYVREVCKFTCNYCKYTLGYQPSVISKTPGKLALK 909
>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
Length = 440
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
+A++ T YGD+ + GQ++GS C
Sbjct: 363 YAIVTMTTTGYGDMTPETAIGQLMGSFC 390
>SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
+A++ T YGD++ +G+I+GS+C
Sbjct: 466 WAVVTMTTVGYGDMRPITVWGKIVGSLC 493
>SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)
Length = 605
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
+A+I T YGD+ GQI+GS+C
Sbjct: 370 WAIITMTTVGYGDMSPKTLSGQIIGSLC 397
>SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26)
Length = 370
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 514 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSV-ARPITEDERTS 654
K ++ + EA E+R + P P Q+ +V A PITEDE TS
Sbjct: 63 KKEETARLEAEPEQRAEVEEHPPPSKPFQRQRRGAVSAAPITEDEATS 110
>SB_36164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 428 PRRRNKSVESLQINVQRIKEYRARLILSRKAKRC*RVRPMKK 553
P R N S+ S I ++RI YRA L LS + ++ P+K+
Sbjct: 98 PYRSNLSLSSEFIPIERIYPYRANLSLSIEFIPIEKIYPIKR 139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,696,894
Number of Sequences: 59808
Number of extensions: 427021
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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