Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00517
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    65   4e-11
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    58   5e-09
AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related...    32   0.39 
AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related ...    32   0.39 
Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48584-8|CAK55179.1|  435|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48584-7|CAH04712.1|  448|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48584-3|CAD57715.1|  524|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF005246-1|AAB95119.1|  556|Caenorhabditis elegans voltage-depen...    29   3.6  
AL021566-1|CAA16501.1|  328|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 4/173 (2%)
 Frame = +1

Query: 142 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKK---LRP*LHVLQLGRYVL*CD 312
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR  K   + P   V  L R V+ C 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAP-RPVAGLLRSVVRCP 62

Query: 313 AQLFGTILKYAPVEDSLFVKLGPQIEPSICPNDWNCCRSP*TQQVC*IIANQCSKNKGIQ 492
            + + T  +      SL       I  +             T +    +     + K  +
Sbjct: 63  QKRYNTKTRLGR-GFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYK 121

Query: 493 SASYTVP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDER 648
           +     P K     KG+++ EE K+A QLRG ++P+         R +T+ ER
Sbjct: 122 AKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAER 174



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +2

Query: 401 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILSRK 517
           ARTIGIAVD RR NK+ E L+ N  R+KEY+A+LIL  K
Sbjct: 91  ARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPK 129



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +3

Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAD*TQ 395
           LR +VRCP  RY+TK R GRGF+L+E++AA  +Q
Sbjct: 55  LRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQ 88


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 22/39 (56%), Positives = 29/39 (74%)
 Frame = +1

Query: 142 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKK 258
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR  K
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAK 42



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = +3

Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAD 386
           LR +VRCP  RY+TK R GRGF+L+E++AA+
Sbjct: 55  LRSVVRCPQKRYNTKTRLGRGFSLQELKAAE 85


>AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           b protein.
          Length = 548

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 475 KNKGIQSASYTVPKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDE 645
           KN+G +++  T  K KK+ K +A+ ++++   + +G P  P Q P  K V   + E E
Sbjct: 201 KNRGNKASEETQKKPKKISKFKASRQQKEPENEQKGAPEPPAQAPPTKVVEEMMNELE 258


>AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           a protein.
          Length = 660

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 475 KNKGIQSASYTVPKGKKVLKGEANEEERKLATQLRG-PLMPVQQPAPKSVARPITEDE 645
           KN+G +++  T  K KK+ K +A+ ++++   + +G P  P Q P  K V   + E E
Sbjct: 201 KNRGNKASEETQKKPKKISKFKASRQQKEPENEQKGAPEPPAQAPPTKVVEEMMNELE 258


>Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
           +A+   T   YGD+    SFG+++GS+C
Sbjct: 399 WAICTMTTVGYGDMTPHTSFGRLVGSLC 426


>Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
           +A+   T   YGD+    SFG+++GS+C
Sbjct: 399 WAICTMTTVGYGDMTPHTSFGRLVGSLC 426


>Z48584-8|CAK55179.1|  435|Caenorhabditis elegans Hypothetical
           protein ZK1321.2f protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
           F ++  T   YGDL     FG+++G +C
Sbjct: 364 FVLVTMTTVGYGDLVPLSPFGKVVGGMC 391


>Z48584-7|CAH04712.1|  448|Caenorhabditis elegans Hypothetical
           protein ZK1321.2e protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
           F ++  T   YGDL     FG+++G +C
Sbjct: 377 FVLVTMTTVGYGDLVPLSPFGKVVGGMC 404


>Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical
           protein ZK1321.2d protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
           F ++  T   YGDL     FG+++G +C
Sbjct: 430 FVLVTMTTVGYGDLVPLSPFGKVVGGMC 457


>Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1321.2c protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
           F ++  T   YGDL     FG+++G +C
Sbjct: 465 FVLVTMTTVGYGDLVPLSPFGKVVGGMC 492


>Z48584-3|CAD57715.1|  524|Caenorhabditis elegans Hypothetical
           protein ZK1321.2b protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
           F ++  T   YGDL     FG+++G +C
Sbjct: 453 FVLVTMTTVGYGDLVPLSPFGKVVGGMC 480


>Z48584-2|CAA88477.2|  481|Caenorhabditis elegans Hypothetical
           protein ZK1321.2a protein.
          Length = 481

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
           F ++  T   YGDL     FG+++G +C
Sbjct: 410 FVLVTMTTVGYGDLVPLSPFGKVVGGMC 437


>AF005246-1|AAB95119.1|  556|Caenorhabditis elegans
           voltage-dependent potassium channelalpha subunit
           protein.
          Length = 556

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 464 FAMIQQTCCVYGDLQQFQSFGQILGSIC 381
           +A+   T   YGD+    SFG+++GS+C
Sbjct: 397 WAICTMTTVGYGDMTPHTSFGRLVGSLC 424


>AL021566-1|CAA16501.1|  328|Caenorhabditis elegans Hypothetical
           protein F08E10.1 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 12  LKFLAINY*N---NKLLFFRNKVHGVVRTSISIFV 107
           + F+  NY N   N L+ F   VHG+  T I +FV
Sbjct: 257 ISFIYFNYQNQFHNNLIVFAFAVHGIASTLIMVFV 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,614
Number of Sequences: 27780
Number of extensions: 326696
Number of successful extensions: 882
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)