Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00517
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.58 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 245 FCFLRYRRAGWLNQVLTNLCQSLWKC 168
           FC+ R   A W N V  NL  SL KC
Sbjct: 538 FCYFRRNAATWKNAVRHNL--SLHKC 561


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 373 LGPQIEPSICPNDWNC 420
           L P I  +IC N W C
Sbjct: 365 LSPSIHDNICSNGWIC 380


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 352 EDSLFVKLGPQIEPSICPNDWNCCRS 429
           ED++ V      E  + P   NCCRS
Sbjct: 378 EDTMSVDRMQHCELHMQPRKKNCCRS 403


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 352 EDSLFVKLGPQIEPSICPNDWNCCRS 429
           ED++ V      E  + P   NCCRS
Sbjct: 378 EDTMSVDRMQHCELHMQPRKKNCCRS 403


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 454 IIANQCSKNKGIQSASYTVPKGKKVLKG 537
           +IA +   +  + S  YT+P G  V+ G
Sbjct: 416 LIAREIKTDLKLASGDYTIPAGCTVVIG 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,251
Number of Sequences: 438
Number of extensions: 4367
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)