Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00517
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    65   4e-11
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    65   4e-11
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            62   5e-10
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    56   3e-08
At5g23580.1 68418.m02767 calcium-dependent protein kinase 9 (CDP...    31   0.63 
At4g32695.1 68417.m04654 hypothetical protein hypothetical prote...    31   0.84 
At2g24680.1 68415.m02947 transcriptional factor B3 family protei...    30   1.5  
At3g06650.1 68416.m00774 ATP-citrate synthase, putative / ATP-ci...    30   1.9  
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    28   7.8  
At1g07330.1 68414.m00781 hypothetical protein                          28   7.8  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +1

Query: 142 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKK 258
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R KK
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKK 40



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 24/43 (55%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
 Frame = +2

Query: 401 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLIL-SRKAKR 526
           A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++  R+A++
Sbjct: 89  APTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARK 131



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = +3

Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAA 383
           LRP+V   T++Y+ KVR G+GFTL E++AA
Sbjct: 53  LRPVVHGQTLKYNMKVRTGKGFTLEELKAA 82



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 514 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDERTSK 657
           + +KV  G++  EE   ATQ++G  +P+ +  P      +T + ++ K
Sbjct: 128 RARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFK 175


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 27/39 (69%), Positives = 31/39 (79%)
 Frame = +1

Query: 142 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKK 258
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R KK
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKK 40



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 24/43 (55%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
 Frame = +2

Query: 401 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLIL-SRKAKR 526
           A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++  R+A++
Sbjct: 89  APTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARK 131



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = +3

Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAA 383
           LRP+V   T++Y+ KVR G+GFTL E++AA
Sbjct: 53  LRPVVHGQTLKYNMKVRTGKGFTLEELKAA 82



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 514 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDERTSK 657
           + +KV  G++  EE   ATQ++G  +P+ +  P      +T + ++ K
Sbjct: 128 RARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFK 175


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +1

Query: 142 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKK 258
           K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+  R KK
Sbjct: 2   KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKK 40



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 23/42 (54%), Positives = 33/42 (78%)
 Frame = +2

Query: 401 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILSRKAKR 526
           A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++  +  R
Sbjct: 89  APTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSR 130



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = +3

Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAA 383
           LRP+V   T++Y+ KVRAG+GFTL E++ A
Sbjct: 53  LRPVVHGQTLKYNMKVRAGKGFTLEELKVA 82


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
 Frame = +1

Query: 142 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRR---KQNRIKKLRP 267
           K NN+IPNGHF K W+ +VKT FNQPA + RR   +QN+  K+ P
Sbjct: 2   KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFP 46



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/46 (47%), Positives = 33/46 (71%)
 Frame = +2

Query: 401 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILSRKAKRC*RV 538
           A TIGI+VD  R+N+S+E  Q NVQR+K Y+A+L++  +  R  +V
Sbjct: 89  APTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKV 134



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = +3

Query: 294 LRPIVRCPTVRYHTKVRAGRGFTLREIRAA 383
           +RP+V   T+ Y+ KVRAG+GFTL E++AA
Sbjct: 53  IRPVVHAQTLTYNMKVRAGKGFTLEELKAA 82


>At5g23580.1 68418.m02767 calcium-dependent protein kinase 9 (CDPK9)
           identical to calcium-dependent protein kinase
           [Arabidopsis thaliana] gi|836938|gb|AAA67653; contains
           protein kinase domain, Pfam:PF00069; contains EF hand
           domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 490

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -2

Query: 395 LGSICGPNFTKSESSTGAYFSMVPNSWASHYRT*RPSCRTWSYGLSFFILFC 240
           L   C P    SE    AY+ + P     HY    P C  WS G+  +IL C
Sbjct: 170 LSVFCTPGEAFSELVGSAYY-VAPEVLHKHYG---PECDVWSAGVILYILLC 217


>At4g32695.1 68417.m04654 hypothetical protein hypothetical protein
           yjbI, Bacillus subtilis, PIR2:A69844
          Length = 412

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 457 IANQCSKNKGIQSASYTVPKGKKVLKGEANEEERKLA--TQLRGPL 588
           IAN    +KG+    Y  P+GKKVL  E N   R ++  + +R P+
Sbjct: 316 IANNAQADKGLIGKMYPEPEGKKVLLCEENRGVRSVSMISNMRKPV 361


>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 851

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 466 QCSKNKGIQSASYTVPKGKKVLKGEANEEERK 561
           +CSK+   +S S    KGKK  K  +N EER+
Sbjct: 80  ECSKHSEKESISAVPSKGKKNRKARSNREERR 111


>At3g06650.1 68416.m00774 ATP-citrate synthase, putative /
           ATP-citrate (pro-S-)-lyase, putative / citrate cleavage
           enzyme, putative strong similarity to ATP:citrate lyase
           [Capsicum annuum] GI:13160653; contains Pfam profiles
           PF00549: CoA-ligase, PF02629: CoA binding domain
          Length = 608

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 472 SKNKGIQSASYTVPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDERT 651
           +KN+ +Q A  TVP   + L+    E   KL  +  G + P+++  P  +   ++   ++
Sbjct: 287 AKNQALQDAGATVPTSFEALEVAIKETFDKLVEE--GKVSPIKEVTPPQIPEDLSSAIKS 344

Query: 652 SKLIIP 669
            K+  P
Sbjct: 345 GKVRAP 350


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 263 LSFFILFCFLRYRRAGWLNQV 201
           L FFI FCF  YR +G+L  V
Sbjct: 269 LLFFICFCFSLYRTSGYLRIV 289


>At1g07330.1 68414.m00781 hypothetical protein
          Length = 685

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 466 QCSKNKGIQSASYTVPKGKKVLKGEANEEERKLATQL 576
           Q   N G+    + V KGK + +GE N+ E +  T++
Sbjct: 310 QQGSNDGLVGEKHPVMKGKDLTRGEVNDMESEHMTEI 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,293,875
Number of Sequences: 28952
Number of extensions: 305373
Number of successful extensions: 771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)