Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00514
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 147 1e-36
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 146 3e-36
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 130 2e-31
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 124 1e-29
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 121 9e-29
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 68 2e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 54 3e-08
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 33 0.042
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 29 0.90
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 28 1.2
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 1.6
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 28 1.6
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.6
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 4.8
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 26 6.4
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 26 6.4
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.4
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 26 6.4
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 26 6.4
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 8.4
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 8.4
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 8.4
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 147 bits (357), Expect = 1e-36
Identities = 69/89 (77%), Positives = 81/89 (91%)
Frame = +1
Query: 256 IAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKST 435
IAGLNVLRIINEPTAAA+AYGLD++ +GE NVLIFDLGGGTFDVS+LTI+EG +FEVK+T
Sbjct: 162 IAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEG-IFEVKAT 220
Query: 436 AGDTHLGGEDFDNRLVNHLAEEFKPSTRR 522
AGDTHLGGEDFD+RLVNH +EFK ++
Sbjct: 221 AGDTHLGGEDFDSRLVNHFIQEFKRKNKK 249
Score = 140 bits (339), Expect = 2e-34
Identities = 64/81 (79%), Positives = 71/81 (87%)
Frame = +2
Query: 11 KIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRD 190
++Q DMKHWPFKVI+ GKP +Q+E+KGETK F PEEISSMVL KM+ETAEAYLG V D
Sbjct: 80 EVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLMKMRETAEAYLGGKVTD 139
Query: 191 AVVTVPAYFNDSQRQATKDAG 253
AVVTVPAYFNDSQRQATKDAG
Sbjct: 140 AVVTVPAYFNDSQRQATKDAG 160
Score = 69.3 bits (162), Expect = 5e-13
Identities = 32/47 (68%), Positives = 39/47 (82%)
Frame = +3
Query: 585 TLSSSTEATIEIDALYEGIDFYTRVSRARFEELNADLFRELWNPSRR 725
TLSSS +A+IEID+L+EGIDFYT ++RARFEEL ADLFR+ P R
Sbjct: 271 TLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVER 317
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 146 bits (354), Expect = 3e-36
Identities = 69/89 (77%), Positives = 81/89 (91%)
Frame = +1
Query: 256 IAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKST 435
IAGLNVLRIINEPTAAA+AYGLD++ + E NVLIFDLGGGTFDVS+LTI+EG +FEVK+T
Sbjct: 162 IAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEG-IFEVKAT 220
Query: 436 AGDTHLGGEDFDNRLVNHLAEEFKPSTRR 522
AGDTHLGGEDFD+RLVNH A+EFK ++
Sbjct: 221 AGDTHLGGEDFDSRLVNHFAQEFKRKNKK 249
Score = 138 bits (335), Expect = 6e-34
Identities = 64/81 (79%), Positives = 70/81 (86%)
Frame = +2
Query: 11 KIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRD 190
++Q DMKHWPFKVI GKP IQ+EFKGETK F PEEISSMVL KM+E+AEA+LG V D
Sbjct: 80 EVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFLGGKVTD 139
Query: 191 AVVTVPAYFNDSQRQATKDAG 253
AVVTVPAYFNDSQRQATKDAG
Sbjct: 140 AVVTVPAYFNDSQRQATKDAG 160
Score = 69.3 bits (162), Expect = 5e-13
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = +3
Query: 585 TLSSSTEATIEIDALYEGIDFYTRVSRARFEELNADLFRELWNP 716
TLSSS +A+IEID+LYEGIDFYT ++RARFEEL ADLFR P
Sbjct: 271 TLSSSAQASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEP 314
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 130 bits (314), Expect = 2e-31
Identities = 63/85 (74%), Positives = 71/85 (83%)
Frame = +1
Query: 253 SIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKS 432
+IAGLNVLRIINEPTAAA+AYGLD +NVLIFDLGGGTFDVS+L I +G +FEV +
Sbjct: 165 AIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKI-QGGVFEVLA 223
Query: 433 TAGDTHLGGEDFDNRLVNHLAEEFK 507
TAGDTHLGGEDFDN LV H +EFK
Sbjct: 224 TAGDTHLGGEDFDNALVEHFIQEFK 248
Score = 111 bits (267), Expect = 1e-25
Identities = 51/80 (63%), Positives = 64/80 (80%)
Frame = +2
Query: 17 QQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAV 196
Q+D+KHWPFKVI++ G P I++ + GE K+F +EIS+MVLTKMKE +EA L V AV
Sbjct: 86 QKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAV 145
Query: 197 VTVPAYFNDSQRQATKDAGA 256
+TVPAYF+DSQR ATKDAGA
Sbjct: 146 ITVPAYFSDSQRAATKDAGA 165
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +3
Query: 588 LSSSTEATIEIDALYEGIDFYTRVSRARFEELNADLFRELWNP 716
LSS T+ T+E+D+L GIDF + ++RARFE++NA F+ +P
Sbjct: 276 LSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFKATIDP 318
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 124 bits (299), Expect = 1e-29
Identities = 56/84 (66%), Positives = 75/84 (89%)
Frame = +1
Query: 253 SIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKS 432
+IAGLNV+RI+NEPTAAA+AYGLDK E++++++DLGGGTFDVS+L+ID G +FEV +
Sbjct: 194 TIAGLNVIRIVNEPTAAAIAYGLDKT-DTEKHIVVYDLGGGTFDVSLLSIDNG-VFEVLA 251
Query: 433 TAGDTHLGGEDFDNRLVNHLAEEF 504
T+GDTHLGGEDFDNR++N+LA +
Sbjct: 252 TSGDTHLGGEDFDNRVINYLARTY 275
Score = 111 bits (266), Expect = 1e-25
Identities = 48/78 (61%), Positives = 64/78 (82%)
Frame = +2
Query: 20 QDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVV 199
+D+K +PF ++ND +P +++ G+ K+F PEEIS+M+L+KMK+TAEAYLG V AVV
Sbjct: 116 KDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVV 175
Query: 200 TVPAYFNDSQRQATKDAG 253
TVPAYFND+QRQATKDAG
Sbjct: 176 TVPAYFNDAQRQATKDAG 193
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 585 TLSSSTEATIEIDALYEGIDFYTRVSRARFEELNADLFRELWNP 716
TLSS IEI++ + G DF +SRA+FEE+N DLF++ P
Sbjct: 303 TLSSQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKP 346
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 121 bits (292), Expect = 9e-29
Identities = 59/85 (69%), Positives = 70/85 (82%)
Frame = +1
Query: 253 SIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKS 432
+IAGLNVLR++NEPTAAALAYGLDK K + V +FDLGGGTFD+SIL ++ G +FEV+S
Sbjct: 207 AIAGLNVLRVVNEPTAAALAYGLDK--KNDAIVAVFDLGGGTFDISILELNNG-VFEVRS 263
Query: 433 TAGDTHLGGEDFDNRLVNHLAEEFK 507
T GDTHLGGEDFD LV H+ E FK
Sbjct: 264 TNGDTHLGGEDFDVALVRHIVETFK 288
Score = 86.2 bits (204), Expect = 4e-18
Identities = 41/82 (50%), Positives = 59/82 (71%)
Frame = +2
Query: 11 KIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRD 190
++Q+D+K P+K++ +E +G+T ++P +I +L+KM+ETA YLG V++
Sbjct: 129 EVQRDIKEVPYKIVEH-SNGDAWLEARGKT--YSPSQIGGFILSKMRETASTYLGKDVKN 185
Query: 191 AVVTVPAYFNDSQRQATKDAGA 256
AVVTVPAYFNDSQRQATK AGA
Sbjct: 186 AVVTVPAYFNDSQRQATKAAGA 207
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 67.7 bits (158), Expect = 2e-12
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +1
Query: 253 SIAGLNVLRIINEPTAAALAYGLDK----NLKGERNVLIFDLGGGTFDVSILTIDEGSLF 420
+IAGLN LR++N+ AAAL YG+ K + R V I D G + VSI+ G F
Sbjct: 165 NIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQ-F 223
Query: 421 EVKSTAGDTHLGGEDFDNRLVNHLAEEFK 507
+KST D +LG + D L+++ A EFK
Sbjct: 224 HIKSTVCDRNLGSRNMDKALIDYFAAEFK 252
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +2
Query: 77 QIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDA 250
++++ E F+ ++ + TK+K AEA L +V D V+++PA+F D QR+A +A
Sbjct: 106 KVQYLNEETAFSNIQLIAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEA 163
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/83 (32%), Positives = 51/83 (61%)
Frame = +1
Query: 259 AGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTA 438
AGL VL++I++P A LA + + ++ V++ + G +VS++++ +G L + ++
Sbjct: 189 AGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSV-KGGLMTILASV 247
Query: 439 GDTHLGGEDFDNRLVNHLAEEFK 507
D +LGGE + LVN A+EF+
Sbjct: 248 HDENLGGEQLTDVLVNFFAKEFE 270
Score = 41.9 bits (94), Expect = 9e-05
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +2
Query: 101 KRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDA 250
K E S L ++ E+AE +LG+ V V++VP YF D+QR+A + A
Sbjct: 136 KILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESA 185
Score = 33.1 bits (72), Expect = 0.042
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +3
Query: 588 LSSSTEATIEIDALYEGIDFYTRVSRARFE 677
LS+ T A+ +D+L +GIDF++ ++R R++
Sbjct: 298 LSNGTTASAAVDSLADGIDFHSSINRLRYD 327
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 33.1 bits (72), Expect = 0.042
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 95 ETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDA 250
+ + ++ EEI +M + AE + D V+TVP +FN+ QR +A
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEA 182
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 28.7 bits (61), Expect = 0.90
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 497 KSSSQVQEGSAPELSRTPTPPH 562
K+S++ + G+ P++ R P PPH
Sbjct: 68 KTSAEKKRGAKPQMRRVPIPPH 89
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +2
Query: 8 SKIQQDMKHWPFKVINDCGKPKIQIEFKGETKR 106
S++ +D+++ N+CGKP +++ G+ K+
Sbjct: 284 SELYEDIRNQRVSYCNECGKPPLKLRRVGQNKK 316
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 398 LSTRDRCSK*SPQPATRTWEAKTLITD*STILRKSSSQVQEGSAPELSRTP 550
LS + C++ + + +TW+ +I + L S++ +QEG LS P
Sbjct: 891 LSNKTECTEFANNISLKTWKGHHVIVQYWSRLTASANYIQEGGLGSLSSFP 941
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +1
Query: 487 HLAEEFKPSTRRICA*TLAHSDASARPLSAPRGHSHPAPRPPSRL 621
H+A KPST I A ++AR + PR S A R PSRL
Sbjct: 149 HVATITKPSTSSI-----ARMSSNARIAAIPRAKSSMAVRSPSRL 188
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 498 FRKMVD*SVIKVFASQVRVAGCGLHFEQRSLVDSQDG 388
F +++ SV + S + +A C +FE+RSL Q G
Sbjct: 173 FNRIMTPSVNSQYISTIGLAKCEEYFEERSLASLQRG 209
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 487 HLAEEFKPSTRRICA*TLAHSDASARPLSAPRG----HSHPAPR-PPS 615
H + F R I + ++ DASA P+S P HSH P PPS
Sbjct: 191 HASNSFNFVKRDIDSSNFSNLDASALPISPPSDFFSVHSHNLPNAPPS 238
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 259 AGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVS 390
AGL + +I+N T A YG N+ G +V++++ T +S
Sbjct: 390 AGLPLFQILNGTTVIAQGYG-PLNILGNNSVVLYNFNFCTTRIS 432
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.4
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Frame = -2
Query: 659 DSRVEVDALIQSVNLDGGLGAG*ECPLGALSGRAEASECARVQAQILLVLGLNSSARWLT 480
+ +V DA +Q + L A E A + + + E + + Q + N + +
Sbjct: 263 EEKVSADASVQDIAEKESLDADKEL---ATNDQEDDEEENQAETQKDGAISNNENMQSEV 319
Query: 479 SRLSKSSPPRCVSPAVDFTSNNDPSSIVRMDTSKVPPPRSKIRTFLSP---LRFLSRPYA 309
+ S+ V+ T +PS+ + + SKV P + T +P +R+ S A
Sbjct: 320 QTTNPSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAA 379
Query: 308 SAAAV 294
+AAA+
Sbjct: 380 AAAAL 384
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 173 PDRLPPSPSFLSAPCC*FLLAQIVSSHL*TRSVFSV 66
PDR P P FLS F L + +S + R+ +S+
Sbjct: 248 PDRTNPQPQFLSLTYMVFCLGTLFTSPVLVRNRYSL 283
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 317 PYASAAAVGSLMMRSTFRP 261
PYA A+ GSL+ R FRP
Sbjct: 277 PYALASNYGSLLARIVFRP 295
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 460 EDFDNRLVNHLAEEFKPSTRRICA*TLAHSDA 555
E FD+R + EE +PS RRI LAH++A
Sbjct: 152 ELFDSRFYDRQNEENQPSARRIHG-WLAHNNA 182
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 280 IINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTH 450
++N P A L + N +I+ + D+S L IDE FE S G H
Sbjct: 200 VLNVPENAQLLVTEKDVIIYSSNGVIYGIHVSMADISQLLIDEYKTFEWSSIPGKRH 256
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 355 IFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNH 489
+ +LG GT VSIL GS+ V +T GDT + +N +N+
Sbjct: 174 VLELGAGTGLVSILCAKMGSI--VLATDGDTKVCDGVRENARLNN 216
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 319 LDKNLKGERNVLIFDLGGGTF 381
L N+ G+R VL+F +GG T+
Sbjct: 528 LKTNVPGKRRVLVFFIGGCTY 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,719
Number of Sequences: 5004
Number of extensions: 56483
Number of successful extensions: 239
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -