Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00513
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 109 4e-25
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 61 1e-10
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 49 8e-07
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 42 1e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 40 5e-04
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 34 0.019
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 32 0.078
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 32 0.078
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.14
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 29 0.73
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.96
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 29 0.96
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 1.3
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 27 2.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.2
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 27 2.2
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 27 2.9
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 5.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 26 6.8
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 26 6.8
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 6.8
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 109 bits (262), Expect = 4e-25
Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 ISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 432
+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN
Sbjct: 36 VSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNT 95
Query: 433 ANVIRYFPTQALNFAFKDKYKQVF 504
ANV+RYFPTQALNFAFKDK+K++F
Sbjct: 96 ANVLRYFPTQALNFAFKDKFKKMF 119
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Frame = +3
Query: 585 SLCFVYPLDFARTRLAADV--GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 758
SL FVY LD+ARTRLA D K G+R+F+GL + K ++SDGL GLYRGFG SV GI
Sbjct: 146 SLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGI 205
Query: 759 I 761
+
Sbjct: 206 V 206
Score = 29.9 bits (64), Expect = 0.42
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = +1
Query: 259 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 438
+ A S V ++ + L S + ++++ G+VD + + + GL +RG +
Sbjct: 142 AGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPS 201
Query: 439 VIRYFPTQALNFAFKDKYKQVFL 507
V+ + L F D K V L
Sbjct: 202 VVGIVVYRGLYFGMYDTLKPVVL 224
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 666 FSGLGNCISKIFKSDGLIGLYRG 734
+ G+G C + +G+I L+RG
Sbjct: 71 YKGIGECFKRTAAEEGVISLWRG 93
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/81 (38%), Positives = 50/81 (61%)
Frame = +1
Query: 256 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 435
++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN
Sbjct: 29 VAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGT 81
Query: 436 NVIRYFPTQALNFAFKDKYKQ 498
N +R FP A+ FA + KQ
Sbjct: 82 NCLRAFPYGAVQFATFNMLKQ 102
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +1
Query: 268 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 447
+ +T P + ++ QV + YK I A I K +G+ F+RG +N+++
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLK 295
Query: 448 YFPTQALNF 474
P ++ +
Sbjct: 296 IIPVMSITW 304
Score = 29.9 bits (64), Expect = 0.42
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 600 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGII 761
+P D R R + G G + + + I I+K++G+ G +RG+ ++ II
Sbjct: 245 FPADVLRRRFQVNRIPGIGHN-YKNIKSAIFHIYKTEGINGFFRGYSSNMLKII 297
Score = 29.1 bits (62), Expect = 0.73
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 660 REFSGLGNCISKIFKSDGLIGLYRGFGVS 746
+E++ L + + KI+ +GLIG +RG G +
Sbjct: 54 KEYTSLTSTLVKIWNREGLIGFFRGNGTN 82
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 48.8 bits (111), Expect = 8e-07
Identities = 29/93 (31%), Positives = 50/93 (53%)
Frame = +1
Query: 229 VR*GLPGWRISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 408
V+ G+ G + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 18 VKSGIAGGT-AGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75
Query: 409 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 507
++G+ A + R FP + F ++ ++V +
Sbjct: 76 HGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLI 108
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 597 VYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 734
+YPLD +TR+ VGK D ++G +C+ KI K++G LYRG
Sbjct: 26 LYPLDVVKTRMQLSVGKSD----YNGTFDCLKKIVKNEGPHRLYRG 67
Score = 41.1 bits (92), Expect = 2e-04
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +1
Query: 280 AVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 450
AVA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 16 AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75
Query: 451 FPTQALNFAFKDKYKQVFLAVLTRRRSSGVTSLV 552
P +AL FA D Y +++ V R+ SS S++
Sbjct: 76 APKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109
Score = 31.5 bits (68), Expect = 0.14
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 283 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 459
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 460 QALNFAFKDKYK 495
A F K +
Sbjct: 175 NAGYFGVIQKIR 186
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 39.5 bits (88), Expect = 5e-04
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +1
Query: 256 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 435
+S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 344 LSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSP 400
Query: 436 NVIRYFPTQALNFAFKDKYKQ 498
N+++ P+ A+++ + K+
Sbjct: 401 NLLKVAPSVAISYLVYENCKK 421
Score = 32.3 bits (70), Expect = 0.078
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 594 FVYPLDFARTRL-AADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 758
F+YP+D + R+ +D+ +G + L N +++KS G+ G YRG V + G+
Sbjct: 245 FIYPVDTLKFRIQCSDLSRGQHGKSII-LSNA-KELYKSVGIRGYYRGVLVGILGM 298
Score = 31.1 bits (67), Expect = 0.18
Identities = 18/91 (19%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNF 432
++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ ++RG
Sbjct: 237 MAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVL 292
Query: 433 ANVIRYFPTQALNFAFKDKYKQVFLAVLTRR 525
++ FP A + + K+ ++ +L R
Sbjct: 293 VGILGMFPYSATDLGTFEGLKRTWIGILASR 323
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 34.3 bits (75), Expect = 0.019
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 603 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 758
P+ +TRL D G + S + +CI K + +G GLY+G S+ G+
Sbjct: 182 PIWLVKTRLQLDKKSGQAAQYRSSI-DCIIKTIRLEGFRGLYKGLSASLLGV 232
Score = 29.9 bits (64), Expect = 0.42
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 331 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 474
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 32.3 bits (70), Expect = 0.078
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 672 GLGNCISKIFKSDGLIGLYRGFG 740
G+ + + ++KS+GL+GL+RGFG
Sbjct: 283 GIRHVLGGLYKSEGLLGLFRGFG 305
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 32.3 bits (70), Expect = 0.078
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 591 CFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 734
C+ PL+ AR + + + KG Q G+ I I+K++G+ GLYRG
Sbjct: 220 CWNQPLEVARVEMQS-LTKGI-QHSSPGIMQTIMSIYKNNGIKGLYRG 265
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 31.5 bits (68), Expect = 0.14
Identities = 18/82 (21%), Positives = 36/82 (43%)
Frame = +1
Query: 256 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 435
++ ++ PI+ VK +Q ++A + YK + +I + GLL FW G
Sbjct: 212 VAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATP 265
Query: 436 NVIRYFPTQALNFAFKDKYKQV 501
+ R + + F +K ++
Sbjct: 266 RLARLILSGGIVFTVYEKVMEI 287
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 29.1 bits (62), Expect = 0.73
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 681 NCISKIFKSDGLIGLYRGFGVSVQGI 758
+CI K +S+G LY+GFG + I
Sbjct: 271 DCILKTIRSEGFFALYKGFGAHLARI 296
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.96
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 343 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 441
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 271 SKTAVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 441
S VAP++ VK Q Q + G + + I +G+ +RG +
Sbjct: 19 SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78
Query: 442 IRYFPTQALNFAFKDKYKQVF 504
+ Y P+ ++ F +K K +F
Sbjct: 79 LGYLPSWSIYFVVYEKCKVLF 99
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 28.7 bits (61), Expect = 0.96
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 241 LPGWRISAAVSKTA----VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 408
+P + +S A+S A V P+E V++ LQ+Q K + Y G D +I + GL
Sbjct: 112 MPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGL 166
Query: 409 LSFWRG 426
+G
Sbjct: 167 SGIMKG 172
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 681 NCISKIFKSDGLIGLYRGFGVSVQGI 758
+C+ KI K++GL Y+G + + GI
Sbjct: 60 DCVKKISKNEGLAAFYKGTVLPLLGI 85
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 600 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGF 737
YP D ++++ D + + C I+ GL G YRGF
Sbjct: 231 YPFDIVKSKIQTDGFLS--KATYKNSWQCAKGIYTKAGLRGFYRGF 274
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 474 RLQGQVQAGVPRGVDKKTQFWRYFXXXXXXXXXXXXTSLCF--VYPLDFART 623
RLQ Q A +P V + +FWR F TS+ F P DFA T
Sbjct: 7 RLQPQRFAALPNPVTAENKFWRSFKVPVVAKEYSAITSIHFSAESPYDFAVT 58
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 666 FSGLGNCISKIFKSDGLIGLYRGFGVS 746
++ + + I I+K +G+ G +RGFGV+
Sbjct: 141 YTTIYSSIRDIWKKEGISGFFRGFGVT 167
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -1
Query: 663 HAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRS 541
H P R R RD RS +RS R HR DY RS
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRS 177
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +1
Query: 256 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 435
IS+ + + +AP + +K+ +Q+ S + F +++G+ + WRGN
Sbjct: 25 ISSVICRFMIAPFDVIKIRMQITQSSLR-----------PVFKETVQKEGVRALWRGNVV 73
Query: 436 NVIRYFPTQALNFAFKDKYKQV 501
+ Y A F K K +
Sbjct: 74 AELLYLVYGAAEFVAFSKLKHL 95
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +1
Query: 256 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 435
I+ A SK + P++ V LQ YK D F+ I + G+ +RG
Sbjct: 201 IAGAGSKAIMFPVDTVVKTLQT--------FPSNYKSFKDCFLSIYRNSGIKGLYRGLSV 252
Query: 436 NVIRYFP 456
++++ P
Sbjct: 253 SMLKVAP 259
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 681 NCISKIFKSDGLIGLYRGFGVSV 749
N IS + +S+GL G YRG+ + V
Sbjct: 121 NTISTLARSEGLKGFYRGYWMGV 143
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 367 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 459
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 79 YEITPNLLFKNQELVFRDPPSACAATPTSTY 171
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 672 GLGNCISKIFKSDGLIGLYRGFGVSV 749
G G ++I+K G GL+ G GV +
Sbjct: 258 GAGAAAARIYKEIGFSGLWNGLGVRI 283
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 666 FSGLGNCISKIFKSDGLIGLYRG 734
F + +C K++GL GLYRG
Sbjct: 50 FPTIRSCFQNAVKNEGLKGLYRG 72
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 383 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 276
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,174
Number of Sequences: 5004
Number of extensions: 55790
Number of successful extensions: 194
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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