Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00511
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    38   0.002
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.7  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    27   2.7  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   6.3  

>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 73  IRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVP 252
           +R + IKT VVKRI              + R+Q   D G+D   I  Q+ VL++ L  +P
Sbjct: 5   VRSLVIKTNVVKRIIKDVELAHIDINEAEKRVQSKIDNGEDSAEIEHQKFVLKKHLEALP 64

Query: 253 D 255
           D
Sbjct: 65  D 65


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 269 NQSIYRSQNYFRNRTGPQRTRGIHY 343
           +Q+I+++  Y  ++TGP R R +HY
Sbjct: 118 HQAIWQTLRYAYSQTGPLRHRRLHY 142


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 154 QKNRIQRIK-DEGQDEHNIRKQEEVLQESLMMVPDVK 261
           QK+  +R K D+G +E N  +QE++L   L  + D K
Sbjct: 74  QKHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTK 110


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 572 VSPQQGLHRRPRDQIRAPNYMPPQSPAYFTATPSL 676
           +SP Q  +         P   PP SP++ TAT SL
Sbjct: 381 ISPNQTFNPVKSSVKALPTLEPPSSPSHATATSSL 415


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 614 IRAPNYMPPQSPAYFTATPSLTPM 685
           + A  Y PP++P   T + SLTP+
Sbjct: 341 VNASTYNPPRAPLQRTPSGSLTPL 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,235
Number of Sequences: 5004
Number of extensions: 35010
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)