Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00511
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        29   2.9  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   28   6.7  
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_41462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 46  IQQEMADPRIRQIKIKTGVVKR 111
           I     DPR+RQ+KIKTG+VKR
Sbjct: 86  IMAAAVDPRLRQLKIKTGIVKR 107



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 234 VPDDGSRCQRRLIKAYT--DLKTTLETEQDLKEHEEYITAEQVLK 362
           V D G + +  + +     D+K   E E+DL + E+YI A+Q+L+
Sbjct: 170 VVDQGKKVENMIAENQDEHDIKKQAECEKDLSDKEDYIQAKQMLE 214


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 594 CSPCCGETCACCILGDICFDDD 529
           C  C G +C CC  G +C DDD
Sbjct: 774 CCCCGGVSCCCC--GGVCCDDD 793


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 303  ETEQDLKEHEEYITAEQVLKDAEPQLPAI 389
            ETE+ +++HEE + +E   K  E ++PA+
Sbjct: 1636 ETEETVEQHEEVVESEAGEKVEEEEVPAV 1664



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 303  ETEQDLKEHEEYITAEQVLKDAEP 374
            ETE+ ++EHEE + +E+V ++  P
Sbjct: 1591 ETEETVEEHEEVVESEEVEEEEAP 1614



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 303  ETEQDLKEHEEYITAEQVLKDAEPQLPAI 389
            ETE+ ++EHEE + +E+  K  E  +P +
Sbjct: 1731 ETEETVEEHEEVVESEEGKKVEEEGVPTV 1759


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 495 NVPPPRQPQHKSRHQNKCHQEYNKHKFRHSKD 590
           NVP   +PQ K+   N   +E+NK      KD
Sbjct: 682 NVPKDEKPQGKTESANPSEEEHNKEDKPQEKD 713


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,076,373
Number of Sequences: 59808
Number of extensions: 259529
Number of successful extensions: 1068
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)