Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00511
         (728 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR542186-1|CAG46983.1|  108|Homo sapiens TBCA protein.                 70   7e-12
CR542170-1|CAG46967.1|  108|Homo sapiens TBCA protein.                 70   7e-12
BT007354-1|AAP36018.1|  108|Homo sapiens tubulin-specific chaper...    70   7e-12
BC105285-1|AAI05286.1|  108|Homo sapiens tubulin folding cofacto...    70   7e-12
BC018210-1|AAH18210.1|  108|Homo sapiens tubulin folding cofacto...    70   7e-12
CR457211-1|CAG33492.1|  615|Homo sapiens LMO6 protein.                 31   4.2  
BT007423-1|AAP36091.1|  615|Homo sapiens LIM domain only 6 protein.    31   4.2  
BC016856-1|AAH16856.1|  615|Homo sapiens LIM domain only 6 protein.    31   4.2  
BC002468-1|AAH02468.1|  615|Homo sapiens LIM domain only 6 protein.    31   4.2  
AJ011654-1|CAA09726.1|  615|Homo sapiens triple LIM domain prote...    31   4.2  

>CR542186-1|CAG46983.1|  108|Homo sapiens TBCA protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 7e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>CR542170-1|CAG46967.1|  108|Homo sapiens TBCA protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 7e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>BT007354-1|AAP36018.1|  108|Homo sapiens tubulin-specific chaperone
           a protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 7e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>BC105285-1|AAI05286.1|  108|Homo sapiens tubulin folding cofactor A
           protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 7e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>BC018210-1|AAH18210.1|  108|Homo sapiens tubulin folding cofactor A
           protein.
          Length = 108

 Score = 70.1 bits (164), Expect = 7e-12
 Identities = 32/66 (48%), Positives = 46/66 (69%)
 Frame = +1

Query: 58  MADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQES 237
           MADPR+RQIKIKTGVVKR+             Q+ +I++++ E  + ++I+KQ E+LQES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 238 LMMVPD 255
            MM+PD
Sbjct: 61  RMMIPD 66



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 255 CQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL 359
           CQRRL  AY DL+  LE E+DL+E EEY  A  VL
Sbjct: 67  CQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVL 101


>CR457211-1|CAG33492.1|  615|Homo sapiens LMO6 protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


>BT007423-1|AAP36091.1|  615|Homo sapiens LIM domain only 6 protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


>BC016856-1|AAH16856.1|  615|Homo sapiens LIM domain only 6 protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


>BC002468-1|AAH02468.1|  615|Homo sapiens LIM domain only 6 protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


>AJ011654-1|CAA09726.1|  615|Homo sapiens triple LIM domain protein
           protein.
          Length = 615

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 501 PPPRQPQHKSRHQNKCHQEYNKHKFR 578
           PPPR P  +  H +  H  +N+H  R
Sbjct: 503 PPPRAPSRRRHHHHNHHHHHNRHPSR 528


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,309,080
Number of Sequences: 237096
Number of extensions: 1263099
Number of successful extensions: 7827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7814
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)