Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00511
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.0  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 522 HKSRHQNKCHQEYNKHKFRHSKDYID 599
           +K+ H N  +  YN  K  ++ +YI+
Sbjct: 309 NKTIHNNNNYNNYNNKKLYYNINYIE 334


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 19  ALKKKTRSIIQQEMADPRIR 78
           +LK +   ++QQ+  DPR+R
Sbjct: 104 SLKYEVEFLLQQQWYDPRLR 123


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 19  ALKKKTRSIIQQEMADPRIR 78
           +LK +   ++QQ+  DPR+R
Sbjct: 104 SLKYEVEFLLQQQWYDPRLR 123


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 19  ALKKKTRSIIQQEMADPRIR 78
           +LK +   ++QQ+  DPR+R
Sbjct: 155 SLKYEVEFLLQQQWYDPRLR 174


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 19  ALKKKTRSIIQQEMADPRIR 78
           +LK +   ++QQ+  DPR+R
Sbjct: 104 SLKYEVEFLLQQQWYDPRLR 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/52 (19%), Positives = 23/52 (44%)
 Frame = +3

Query: 24  EKKNKIDYSARNGRXXXXXXXXQDGRRETDCQGKSSLREGSRATEE*NSKNK 179
           + +N  + +A N          Q+G R+ D +   + + G+R  +   + N+
Sbjct: 433 DNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNR 484


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 507 PRQPQHKSRHQNKCHQEYNKH 569
           P+Q QH+S+ Q +  Q + +H
Sbjct: 181 PQQGQHQSQAQQQHLQAHEQH 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,656
Number of Sequences: 438
Number of extensions: 2439
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)