Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00510
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77660-2|CAB01176.1|  361|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U97403-1|AAB52468.1|  237|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC006648-3|AAF39855.1|  216|Caenorhabditis elegans Hypothetical ...    28   7.3  

>Z77660-2|CAB01176.1|  361|Caenorhabditis elegans Hypothetical
           protein F38H4.2 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = -3

Query: 273 ITKILREFCFHKNRMGSVRSSLFDTFSHIFVSLSNYFAGV--LLFLTDLY 130
           +++  RE    +  +GS+++ +F++FS++  SL N F  +  L +L +LY
Sbjct: 154 LSQTFRERNVRRISLGSMQNPIFNSFSYLENSLRNQFLELEGLAYLRELY 203


>U97403-1|AAB52468.1|  237|Caenorhabditis elegans Hypothetical
           protein T10E9.5 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/53 (28%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -1

Query: 317 LNFIIYSSK-P*VHYL*QKYYGNFVSTKIEWVVLDLHSLTPFHIFLLVSQIIL 162
           L  +IY++  P +++L +K++  F+S + +W+++ L ++    I LL+  I+L
Sbjct: 17  LLLLIYATICPLIYHLLKKFFPPFISNRRKWIIVGLTTIV-ISIQLLLGVILL 68


>AC006648-3|AAF39855.1|  216|Caenorhabditis elegans Hypothetical
           protein F59H6.6 protein.
          Length = 216

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -3

Query: 360 LINIFKVKIKQXXXXXXXXXXXKTISSLFITKILREFCFHKNRMGSVRSSLFDTFSHIF 184
           L+NI + K+ Q              S    +K+L   CF KNR+   RS + D+F + F
Sbjct: 115 LLNIIRYKMLQFNSFQFQDLKLLNFSKKN-SKLLLFLCFTKNRIWPKRSPISDSFENNF 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,808,937
Number of Sequences: 27780
Number of extensions: 196519
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)