Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00510
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.5  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 281 HYL*QKYYGNFVSTKIEWVVLDLHSL 204
           H +  ++YGN  +    W++L+ HS+
Sbjct: 123 HEVCGRFYGNIQTVXNNWLLLEGHSI 148


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 671 LYSNINEFYHLKFRLHISNILIFYKSALK*RIS*LPEQS 555
           L++ +   YH +  +H  ++  F K+A   R+S L +Q+
Sbjct: 81  LHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQA 119


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 288 ISSLFITKILREFCFHKNRMGSVRSSLFDTFSHIFVSLSNYFAGVL 151
           ++SL  TK+ +       + G    S  D+F     S+ NY++G L
Sbjct: 515 LNSLSATKLSKIILM---QFGDKLESSHDSFQAALRSIENYYSGKL 557


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 288 ISSLFITKILREFCFHKNRMGSVRSSLFDTFSHIFVSLSNYFAGVL 151
           ++SL  TK+ +       + G    S  D+F     S+ NY++G L
Sbjct: 553 LNSLSATKLSKIILM---QFGDKLESSHDSFQAALRSIENYYSGKL 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,051
Number of Sequences: 438
Number of extensions: 2851
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)