Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00509
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    42   1e-04
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    32   0.078
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    29   0.96 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    28   1.7  
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    27   2.9  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   5.1  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    25   9.0  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   9.0  

>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 618 LTVLRVVVFCLVWILTLSRHHLWLLPNLTEDVGFFASFWPLYHY 749
           L +LR  +FC+  ++   R  +WL PNL  DVGF  SF PL+ +
Sbjct: 178 LVILRFFLFCITAVIV--RPGIWLFPNLLADVGFCDSFKPLWSW 219



 Score = 29.5 bits (63), Expect = 0.55
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 520 ITVCMFPLWPATVRIGVYYLSI 585
           + + +FPLWP  +R G +YLS+
Sbjct: 145 LALVLFPLWPMFMRKGAWYLSM 166



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 401 IRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVSL 514
           + L+++  Q F D +  YVW+Y+P P       +L +L
Sbjct: 106 VELQINRNQDFQDDMH-YVWLYEPLPKRVMALAVLFAL 142


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 582  HSAAAFLVMIIGLTVLRVVVFCLVWILTLSRHHLWLLPNLTEDVGFFASFW 734
            H  A FL++I+    + + +  L  + +LSR+H W+LP L   +GF A  W
Sbjct: 2217 HKWAMFLLVILFYVAIWIALVAL--LASLSRYHSWILPIL--GLGFGAPRW 2263


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 111 KAVDALLTSKWATGKNPAFTTRIEVTHYLHRMLLHKLFHRAKKVPVSEKN 260
           KAV+ L + +W  G+ P+F   +E T     M +  +  R +KV  S  N
Sbjct: 268 KAVNELQSWEWTFGQTPSFKQHLESTELSVSMDISVVHGRLEKVIFSTPN 317


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/79 (30%), Positives = 35/79 (44%)
 Frame = -3

Query: 272 IYLSILLAHRDLLGPVEEFMQKHTMQVMSHFDSCCERWILAGRPF*SQQGIYSLCTCEIF 93
           +Y S  L    LLGP+  F ++H +QV              G PF      YS+ +   F
Sbjct: 541 VYESSALTWPLLLGPLRFFYEQH-LQVF-----------FMGNPF----VWYSVISLVAF 584

Query: 92  HVVI*KFCLLRWYIRFEPF 36
            V++  FCL RW + +  F
Sbjct: 585 FVIVQIFCLARWNLGYNDF 603


>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 104 RYKGCRCLVDFKMGDRQESSVHNKNRSDS 190
           R K CR ++  +   R + S+H + RS S
Sbjct: 59  RIKACRTIISAREQQRTQHSIHRRERSSS 87


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 669 TTSGSRLDRRRPRGARSALLSSRGKPPRYAQVIYSYSNSGRPEWEHANRDRPKETR 502
           +T+GS  D   P     +    RG+PP+ +   Y  S+    E+    R R + TR
Sbjct: 3   STAGS--DASTPTNHTVSSKKRRGRPPKGSYAAYGSSDDDDEEYSGRTRRRNRNTR 56


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 573 LPEHSAAAF-LVMIIGLTVLRVVVFCLVWILTLSRHHLWLLPNLTEDVGFFASF 731
           L E+ A+   L ++IG   L   +  ++      RHHL+ L   +E  G+ A F
Sbjct: 314 LEEYFASKLPLYVVIGQLSLYGSIISIIQTFIFDRHHLYTLHWTSEMGGYLAGF 367


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 594 AFLVMIIGLTVLRVVVFCLVWILTLSRHHLWLLPNLTEDVGFFASF 731
           A+++ I+ +  LR++      I ++SR   W L NLT   G F  F
Sbjct: 44  AWVIHIVLIAALRLIFHA---IPSVSRELAWTLTNLTYMAGSFIMF 86


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 493 LWDSGLFGTITVCMFPLWPATVRIG 567
           +W++G FG I      L PA+ RIG
Sbjct: 173 VWNAGYFGVIQKIRNSLTPASSRIG 197


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 633 VVVFCLVWILTLSRHH--LWLLPNLTEDVGFFASFW 734
           +  F +  I   S +H   W+LP++T  + F A  W
Sbjct: 381 IATFAMYLIPNQSAYHAMFWMLPSITGGIAFVALPW 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,002
Number of Sequences: 5004
Number of extensions: 54926
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)