Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00509
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 32 0.58
12_02_0352 - 17862577-17863528,17864076-17864827 31 0.76
04_04_0245 - 23872901-23872906,23873567-23873600,23874497-238747... 31 1.3
02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141 30 2.3
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 29 4.1
06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777 29 4.1
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 29 4.1
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 29 5.4
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804... 29 5.4
05_04_0433 - 21181713-21183998 28 7.1
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 28 9.4
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 28 9.4
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 31.9 bits (69), Expect = 0.58
Identities = 11/34 (32%), Positives = 25/34 (73%)
Frame = -3
Query: 725 REEPDVLGEVRQQPEVMPGQRQDPD*TEDDHAEH 624
++EP +L +++Q+P+V+P ++P +DD +E+
Sbjct: 253 QQEPQLLAQLQQEPQVVPALHEEPQ--DDDRSEN 284
>12_02_0352 - 17862577-17863528,17864076-17864827
Length = 567
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 677 MPGQRQDPD*TEDDHAEHGQPYYHHEESR 591
+P DP+ +DD +HG Y HH +SR
Sbjct: 372 IPHDTPDPEEEDDDGEKHGGSYGHHHQSR 400
>04_04_0245 -
23872901-23872906,23873567-23873600,23874497-23874765,
23876691-23876741
Length = 119
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 11 NERRVRSREMAQSECTNEEDKISKSPRGIFHR 106
NE+ V R MA+ E +E + + SP G+ HR
Sbjct: 50 NEQEVDKRVMAKGELADERESTATSPEGMGHR 81
>02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141
Length = 352
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 17 RRVRSREMAQSECT---NEEDKISKSPRGIFHRYKGCRCLVDFKMGDRQESSVHNKNRSD 187
R +R R++ Q+E + N S S G YKG D+K G R+E +V ++
Sbjct: 110 RAIRERQLKQAEESLKKNPSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGG 169
Query: 188 S 190
S
Sbjct: 170 S 170
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 663 SGSRLDRRRPRGARSALLSSRGKPPRYAQVIYSYSNSGRPEWEHANRDRPKET 505
+ ++L AR L RY+Q+ + S RPEW H ++RP +
Sbjct: 615 NATKLSSNLGESARRQYLREHRSSSRYSQLAAA-EPSDRPEWTHQFQERPSSS 666
>06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777
Length = 248
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 678 DAWTTSGSRLDRRRPRGARSALLSSRGKPPRYA 580
+A +G RLDRRR G RS+ SS G+ R A
Sbjct: 161 NAGAPTGRRLDRRRLAGRRSSSSSSSGEVLRIA 193
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 615 GLTVLRVVVFCLVWILTLSRHHLWLLPNLTEDVG 716
G +VLR+V + + +T ++ W+L N VG
Sbjct: 90 GASVLRIVPYAALHYMTYEQYRCWILNNFAPSVG 123
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -2
Query: 678 DAWTTSGSRLDRRRPRGARSALLSSRGKPPRYAQVIYSYSNSGRPEWEHANRDRPKETRI 499
D +S SRLDRRR +RS S R Y+Y + +W + D +++
Sbjct: 200 DRRVSSDSRLDRRRRSRSRSRSRSRSRSRSRTRTRSYNYGSRRDSDWRASGADL-DHSKV 258
Query: 498 PQ 493
P+
Sbjct: 259 PE 260
>01_06_1078 +
34378985-34380064,34380155-34380283,34380362-34380430,
34380536-34380588,34381309-34381421,34381565-34382132,
34382520-34382580,34382624-34382665
Length = 704
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 446 DAYVWIYDPKPWYYWVC 496
DA +I D K W YWVC
Sbjct: 85 DAISFIQDTKSWLYWVC 101
>05_04_0433 - 21181713-21183998
Length = 761
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 421 GASFFGYGRCLRLDLRPEALVLL--GLWDSGLF 513
GASFFGY + P A V + LWD G +
Sbjct: 233 GASFFGYAPGTARGMAPRARVAMYKALWDEGTY 265
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = -3
Query: 725 REEPDVLGEVRQQPEVMPGQRQDPD*TEDDHAEH 624
++EP +L +++Q+ +V+P ++P +DD +E+
Sbjct: 256 QQEPQLLAQLQQELQVVPALHEEPQ--DDDRSEN 287
>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 29 SREMAQSECTNEEDKISKSPRGIFHRYKGCRCLVDFKMGDRQESSVHN-KNRSDSLLASY 205
SR + + ++ ED + + P + K C K + SSVHN KN + + Y
Sbjct: 1056 SRHPSDASISSAEDGLLRIPLNLVSSLKKIHCSCSDKSRNFSLSSVHNGKNDDQASVHDY 1115
Query: 206 AFA*TLP 226
+ LP
Sbjct: 1116 SLQTALP 1122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,101,036
Number of Sequences: 37544
Number of extensions: 388208
Number of successful extensions: 1199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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