Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00509
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 30   1.8  
SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   29   5.4  
SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0)               29   5.4  
SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)              28   7.2  
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 25/48 (52%), Positives = 36/48 (75%)
 Frame = +3

Query: 612 IGLTVLRVVVFCLVWILTLSRHHLWLLPNLTEDVGFFASFWPLYHYEY 755
           +G+ V+R ++F ++W+++  RH  WLLPNLTE+ GF  SF PLY YEY
Sbjct: 379 MGIVVVRYIIFGILWLISGGRHKFWLLPNLTEECGFLESFVPLYTYEY 426



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 401 IRLEMHMEQVFLDTVD-AYVWIYDPKPWYYWVCGILV 508
           ++LE+H EQ+F D  D AYVWIYDP     +  GI+V
Sbjct: 347 VKLELHEEQIFFDADDEAYVWIYDPVHPKTFAMGIVV 383


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -2

Query: 669 TTSGSRLDRRRPRG--ARSALLSSRGKPPRYA--QVIYSYSNSGRPEWEHANRDRPKETR 502
           TT   R   R PR   +RSA    RG+PPR    ++  S    GRPE +   RDRP   R
Sbjct: 475 TTVKPRHTDREPRRDFSRSAE-RPRGRPPRERPREIRPSRERFGRPERDRQERDRPVRDR 533


>SB_57095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 740 KRPEGREEPDVLGEVRQQPEVMP-GQRQDPD*TEDDHAEHGQPYYHHEE 597
           ++ E  E+P+V G    + E  P G+ ++ +  E++  E G P   HEE
Sbjct: 74  RQEEEEEDPEVNGGEPGENEAEPEGETEEAEEREEESTEEGHPGSTHEE 122


>SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 627 ARSALLSSRGKPPRYAQVIYSYSNSGRPEWEHANRDRPKETRIP 496
           +R+++ S+RGKPP  +  I S  N+         RD  + TR+P
Sbjct: 140 SRASVRSTRGKPPSRSTSIRSQGNTEPLSSGTLTRDYTQSTRLP 183


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 642 RRPRGARSALLSSRGKPP 589
           RRP G R +LL  RG+PP
Sbjct: 666 RRPEGERQSLLQRRGQPP 683


>SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0)
          Length = 771

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 236 LGPVEEFMQKHTMQVMSHFDS 174
           L P E F  KHT+ V +HFDS
Sbjct: 266 LSPEENFPPKHTVLVNAHFDS 286


>SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)
          Length = 292

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/73 (28%), Positives = 25/73 (34%)
 Frame = -3

Query: 521 IVPKRPESHRPSSTKASGRRSRRKHRPYPKKLAPYAXXXXXXXXXXXXXXXXXYPFPRRR 342
           + P    S+R S    S RRS R     P     Y                   P PRR 
Sbjct: 68  VQPSPRLSYRVSCVHPSPRRSYRVSCVQPSPRRSYRVSCVQPSPRRSYWDSCVQPSPRRS 127

Query: 341 WLGFSLHPFHRRS 303
           +  F +HP  RRS
Sbjct: 128 YRVFCVHPSPRRS 140


>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 663 SGSR--LDRRRPRGARSALLSSRGKPPRYAQVIYSY-SNSGRPEWEHANRDRPK 511
           SG R  L RRRP  A   +++ +  PPR   ++ ++ + +G P+    +   P+
Sbjct: 156 SGERVLLSRRRPTSAMGRIITKKKTPPRRTNLLEAFRAVAGTPDGSSYSPSSPR 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,702,764
Number of Sequences: 59808
Number of extensions: 437321
Number of successful extensions: 1533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)