Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00509
(766 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 29 0.047
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 29 0.047
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 24 1.8
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 23 3.1
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 5.4
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 22 5.4
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 22 5.4
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 7.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 7.2
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 29.1 bits (62), Expect = 0.047
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 254 LAHRDLLGPVEEFMQKHTMQVMSHFDSCCE-RWILAG 147
L+H L PV+EF ++ T+Q+ ++ RW LAG
Sbjct: 175 LSHALLKDPVKEFWERRTLQISDGIENIGSIRWELAG 211
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 29.1 bits (62), Expect = 0.047
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 254 LAHRDLLGPVEEFMQKHTMQVMSHFDSCCE-RWILAG 147
L+H L PV+EF ++ T+Q+ ++ RW LAG
Sbjct: 228 LSHALLKDPVKEFWERRTLQISDGIENIGSIRWELAG 264
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 506 PESHRPSSTKASGRRSRRKHRPY 438
P P S K SGRR RR+ Y
Sbjct: 395 PPRQTPPSRKESGRRRRRRTPRY 417
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 23.0 bits (47), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 469 PEALVLLGLWDSGLFGTITVCMFPLW-PATVRIGVYYL 579
P ++ + ++ +G+FG IT C + PA YYL
Sbjct: 42 PLTIIYMIIFVTGIFGNITTCTVIIKNPAMQTATNYYL 79
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 5 TSNERRVRSREMAQSECTNEED 70
TS +R RSRE Q+ NE++
Sbjct: 34 TSRKRYSRSREREQNSYKNEKE 55
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 5 TSNERRVRSREMAQSECTNEED 70
TS +R RSRE Q+ NE++
Sbjct: 34 TSRKRYSRSREREQNSYKNEKE 55
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.2 bits (45), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 5 TSNERRVRSREMAQSECTNEED 70
TS +R RSRE Q+ NE++
Sbjct: 34 TSRKRYSRSREREQNSYKNEKE 55
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 7.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 257 LLAHRDLLGPVEE 219
+LAH DL+ P++E
Sbjct: 646 VLAHNDLMSPLDE 658
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 7.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 543 EWEHANRDRPKETR 502
+WE ANR+ P + R
Sbjct: 551 KWERANRELPDDLR 564
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = -2
Query: 615 LLSSRGKPPRYAQVIYSYSNSGRPEWEHANRDRPKETR 502
L+ +PP + S S +W+H ++D + T+
Sbjct: 903 LVQEPPQPPNSLETAMVASRSINVKWQHKSQDTTEVTK 940
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 7.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 543 EWEHANRDRPKETR 502
+WE ANR+ P + R
Sbjct: 551 KWERANRELPDDLR 564
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = -2
Query: 615 LLSSRGKPPRYAQVIYSYSNSGRPEWEHANRDRPKETR 502
L+ +PP + S S +W+H ++D + T+
Sbjct: 899 LVQEPPQPPNSLETAMVASRSINVKWQHKSQDTTEVTK 936
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,383
Number of Sequences: 438
Number of extensions: 3971
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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