Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00509
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa...    32   0.48 
At4g23493.1 68417.m03385 expressed protein                             30   1.5  
At1g73875.1 68414.m08555 endonuclease/exonuclease/phosphatase fa...    29   4.5  
At2g16030.1 68415.m01838 expressed protein                             28   7.8  

>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHG1a
           GI:3822225 from [Arabidopsis thaliana]; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 494

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = -3

Query: 740 KRPEGREEPDVLGEVRQQPEVMPGQRQDPD*TEDDHAE-HGQPYYHHEESRRAMLR*YTP 564
           ++P+    P ++  V   P + P   QDP  T D+ A  +G P YHH   +R     Y P
Sbjct: 34  QQPDNNNMPAMVAHV---PNLEPHSLQDP--TYDNSAMFYGLPQYHHHPHQRVPTNFYVP 88

Query: 563 ILTVAGQSGNM 531
            +      G +
Sbjct: 89  YVAFQAPPGQL 99


>At4g23493.1 68417.m03385 expressed protein
          Length = 87

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 587 AMLR*YTPILTVAGQSGNMQTVIVPKRPESHRPSSTK 477
           A++    PI TV+G +G +   IVPK+P +   S ++
Sbjct: 6   ALIEKLKPIFTVSGSNGKVVRTIVPKKPVNENISESE 42


>At1g73875.1 68414.m08555 endonuclease/exonuclease/phosphatase
           family protein contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 454

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +3

Query: 45  KANVPTKKTKFLNHHVEYFTGTKAVDALLTSKWATGKNPAFTTRIEVTHYLHRMLLHKLF 224
           +  V  K+  F NH+   F+ + ++   L ++W+  +    T   E TH  H++ L+  +
Sbjct: 316 QTEVEPKERSFRNHYA--FSASASISGSLLNEWSQEELQLATGGQETTHVQHQLKLNSAY 373


>At2g16030.1 68415.m01838 expressed protein
          Length = 231

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 515 PKRPESHRPSSTKASGRRSRRKHRPYPKKLA 423
           P +P +H P ST  S   S R+H P PKK A
Sbjct: 41  PSKPHTHFPRSTCDS---SPRQHLPLPKKNA 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,083,454
Number of Sequences: 28952
Number of extensions: 298468
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)