Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00508
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 153 3e-38
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 136 3e-33
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 132 4e-32
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 119 4e-28
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 109 4e-25
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 93 3e-20
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 82 7e-17
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 56 4e-09
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.006
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 2.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 2.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.7
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 3.7
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 4.9
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 6.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 8.6
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 153 bits (371), Expect = 3e-38
Identities = 70/101 (69%), Positives = 79/101 (78%)
Frame = +1
Query: 220 GLHFPSCHPQFQLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNG 399
G F PQF LQGGDFT NGTGGKSIYG KF DENF LKH PG+LSMANAG +TNG
Sbjct: 48 GSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNG 107
Query: 400 SQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFAASLG 522
SQFFITTV T WLDG+HVVFG V EGM+VVK++E+ ++ G
Sbjct: 108 SQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSG 148
Score = 85.8 bits (203), Expect = 6e-18
Identities = 38/59 (64%), Positives = 43/59 (72%)
Frame = +2
Query: 92 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCKEG 268
FFDV + PLG+IV +L DV PKT NFRALCTGEKG+GY GS FHRVIP F + G
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGG 63
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 136 bits (329), Expect = 3e-33
Identities = 61/94 (64%), Positives = 72/94 (76%)
Frame = +1
Query: 217 QGLHFPSCHPQFQLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 396
+G F P F +QGGD T +GTGGKSIYG++F DENF L H PG+LSMANAG D+N
Sbjct: 72 EGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSN 131
Query: 397 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 498
GSQFFITTVKT WLDG HVVFG V+ G ++VK+I
Sbjct: 132 GSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKI 165
Score = 82.6 bits (195), Expect = 5e-17
Identities = 39/69 (56%), Positives = 45/69 (65%)
Frame = +2
Query: 62 NTGKMSLPRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRV 241
N G V+FD+ D LG++ I L PKT ENFRAL TGEKGFGY+GSIFHRV
Sbjct: 20 NRGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRV 79
Query: 242 IPNFSCKEG 268
IPNF + G
Sbjct: 80 IPNFMIQGG 88
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 132 bits (320), Expect = 4e-32
Identities = 64/108 (59%), Positives = 73/108 (67%)
Frame = +1
Query: 208 LRLQGLHFPSCHPQFQLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGA 387
L +G F F LQGGDFT NGTGG+SIYG KFEDENF LKH P +LSMANAG
Sbjct: 49 LTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGP 108
Query: 388 DTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFAASLGRPL 531
+TNGSQFFITTV T LDG+HVVFG V++G V+ IE P+
Sbjct: 109 NTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPV 156
Score = 50.4 bits (115), Expect = 3e-07
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +2
Query: 92 FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG----YKGSIFHRVIPNFSC 259
+F +++D I EL +V PKT +NF +LC G + G YKGS FHRVI NF
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65
Query: 260 KEG 268
+ G
Sbjct: 66 QGG 68
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 119 bits (287), Expect = 4e-28
Identities = 53/86 (61%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Frame = +1
Query: 250 FQLQGGDFTNHNGTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVK 426
F +QGGDF + +GTG +I+ ++ F DENFTLKH PG+LSMANAG D+NG QFFITTV
Sbjct: 67 FMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVP 126
Query: 427 TSWLDGRHVVFGNVVEGMEVVKQIET 504
+LDG+HVVFG V+EG ++VK+IE+
Sbjct: 127 CDFLDGKHVVFGEVIEGYDIVKEIES 152
Score = 65.7 bits (153), Expect = 7e-12
Identities = 33/68 (48%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Frame = +2
Query: 83 PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGE------KGFGYKGSIFHRVI 244
P VF D+ +D LG+I I L S + PKT ENFR CTGE K GYK S FHR+I
Sbjct: 5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64
Query: 245 PNFSCKEG 268
F + G
Sbjct: 65 QGFMIQGG 72
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 109 bits (262), Expect = 4e-25
Identities = 53/94 (56%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Frame = +1
Query: 220 GLHFPSCHPQFQLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTN 396
G+ F P F +QGGD T G GG SIYG+KF+DE + L HTG G+LSMANAG +TN
Sbjct: 40 GVIFHRVIPDFVIQGGDPTG-TGRGGTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTN 98
Query: 397 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 498
SQFFIT T WLDG+H +FG VV G+ V K++
Sbjct: 99 SSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRM 132
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/58 (51%), Positives = 39/58 (67%)
Frame = +2
Query: 122 LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCKEGTSPTITALG 295
LGKI+IEL ++ PKTC+NF L ++G+ Y G IFHRVIP+F +G PT T G
Sbjct: 10 LGKILIELYTEHAPKTCQNFYTL--AKEGY-YDGVIFHRVIPDFVI-QGGDPTGTGRG 63
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 93.5 bits (222), Expect = 3e-20
Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +1
Query: 250 FQLQGGDFTNHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVK 426
F +QGGD +GTGG+SI+ FEDE + LKH P +SMAN+G +TNGSQFFITT
Sbjct: 503 FMIQGGDPLG-DGTGGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDL 561
Query: 427 TSWLDGRHVVFGNVVEGMEVVKQIE 501
T WLDG+H +F G++VV +IE
Sbjct: 562 TPWLDGKHTIFARAYAGLDVVHRIE 586
Score = 34.7 bits (76), Expect = 0.014
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 125 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCKEG 268
G I I+L + PK +NF E G+ Y +IFHR+I NF + G
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGG 508
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 82.2 bits (194), Expect = 7e-17
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +1
Query: 247 QFQLQGGDFTNHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTV 423
+F +QGGD + G GG+SI+G F+DE LKH G++SMAN G +TNGSQFFI
Sbjct: 323 RFMIQGGD-PSGTGRGGQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYG 381
Query: 424 KTSWLDGRHVVFGNVVEGMEVVKQIE 501
LD +H +FG VV G+ V+ +E
Sbjct: 382 PAKHLDNKHTIFGRVVGGLNVLDALE 407
Score = 33.9 bits (74), Expect = 0.024
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 125 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCKEGTSPTITALG 295
G+I IEL +D P NF L ++G+ Y+ +IFHR I F +G P+ T G
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMI-QGGDPSGTGRG 337
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 56.4 bits (130), Expect = 4e-09
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 244 PQFQLQGGDFTNHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITT 420
P+F +QGGD T G GG+SIYG F E L+ G++ MA + N SQFFIT
Sbjct: 59 PEFLIQGGDPTG-TGMGGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITL 117
Query: 421 VKTSWLDGRHVVFGNVV 471
T +G+ +FG VV
Sbjct: 118 GPTPEWNGKQTLFGRVV 134
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/57 (45%), Positives = 32/57 (56%)
Frame = +2
Query: 125 GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCKEGTSPTITALG 295
G I IEL PK C NF LC +G+ Y G+I HRV+P F +G PT T +G
Sbjct: 22 GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLI-QGGDPTGTGMG 74
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 113 DAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFSCKEG 268
+ +G +VI+L PKTCENF LC K Y F+ + N++C+ G
Sbjct: 6 ETTVGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTG 54
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 101 VTVDDAPLGKIVIELRSDVTPKTCENFRALCT 196
V D+ P+GKI+I R D+ N C+
Sbjct: 19 VATDNIPIGKIIIRKRVDILSLDSANLTRTCS 50
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 134 VIELRSDVTPKTCENFRALCTGEKGFGYKG-SIFHRVIPNFSCKEGTSPTITALGESPST 310
++++ +D K E +A T G K SI+H+VI KE I L ++PS
Sbjct: 675 LLQIHADKMLKMSEVEKANWTLPSNLGGKSVSIYHKVIKKVYGKEHAQQIIENLQKNPSV 734
Query: 311 AISL 322
I +
Sbjct: 735 TIPI 738
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 260 KEGTSPTITALGESPSTAISLKTRISPLSTLDLASS 367
KE +P+ITA SP +A S + ISP + + +S
Sbjct: 334 KEKNTPSITAKAGSPQSAPSKASYISPYARPGITTS 369
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 3.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 396 WFPVLHHHC 422
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 491 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 342
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 268 DFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFI 414
D + T KS+YG +D+N F + T V+ ADT Q F+
Sbjct: 11 DLEKYPSTATKSVYGQSKDDKNVFDIHPTESEVIPGEVEYADTPSHQNFL 60
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = -1
Query: 480 HAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARSSVLKG------EILVFK 319
H N P + P +S EL + IS+G+DA S VLK E++V +
Sbjct: 228 HELNESPSTPTAPDFPH-YNSSPSELSPTQRRSSISNGKDAPSPVLKDLTSYTQEVIVCR 286
Query: 318 LIAVDGLSPS 289
LSPS
Sbjct: 287 KFLHHSLSPS 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,228
Number of Sequences: 5004
Number of extensions: 71515
Number of successful extensions: 246
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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