Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00505
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    27   3.4  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.9  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   5.9  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.8  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   7.8  

>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = +1

Query: 346 RLHTQIRSHYLPPVSISSSVDTSL*NSIKDIINLTRC*GKIPKSRL*NIANLSVLKKTDN 525
           R+   I+ +     S   +++ +L N I D++N +     +P +    IA +S+LKK  N
Sbjct: 102 RIQNGIKIYSQKTRSQHKNIEDAL-NKISDLLNKSAETLYVPDTPPEKIARISILKKESN 160

Query: 526 EEK 534
           E++
Sbjct: 161 EKR 163


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 549 LYSLWYLYMFTIFSVSAITC 608
           L  LWYL   T FS++++TC
Sbjct: 15  LIYLWYLVDCTSFSMNSVTC 34


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 319 LESIDGEVARLHTQIRSHYLPPVSISSSVDTSL*NSIKDII 441
           LE + G+++   T +  +YL  +++  +V+    + IKDI+
Sbjct: 715 LEQLWGDMSDFSTHLSFYYLCSINLMENVEEESIDKIKDIL 755


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 433 LLYCFTKMCQQKN*WTQ 383
           L+ C T MC+Q+  WT+
Sbjct: 51  LILCLTIMCEQRRSWTE 67


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 302 LSLFVTWRALTVRLPVFILKSEATTCP-LCPSVLLLTHLCKTV*KILST*LDVRERS 469
           L+ FV  R  T R  + +LK    TCP L     ++  L +T  +IL+T  D+ E +
Sbjct: 238 LTPFVRDRRATYRQSLSVLKHVKKTCPHLITKTSIMLGLGETDAEILTTLKDLLEHN 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,453
Number of Sequences: 5004
Number of extensions: 59369
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)