Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00505
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0919 - 7090494-7091219,7091630-7091763,7091860-7091927,709...    33   0.29 
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566...    29   2.7  
08_02_0707 - 20212190-20214592                                         29   4.7  
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    28   8.1  
06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255           28   8.1  
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940...    28   8.1  

>06_01_0919 -
           7090494-7091219,7091630-7091763,7091860-7091927,
           7092471-7092515,7092620-7092639,7092798-7092860,
           7092946-7093115,7093216-7093252
          Length = 420

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +2

Query: 131 DALESPDYASKLDEAKEAA--GNEMLKMMQIVFPMVVQIEMETKSTMASIILVKA*FNSL 304
           +A+ +P     L+E +E    G  +L   Q    ++   + E ++ +  +  +     ++
Sbjct: 306 EAMIAPITGLALEEEEELMIEGQILLANDQKANRLITLFDEEERAMVRMLAALGQPLLTM 365

Query: 305 SLFVTWRALTVRLP-VFILKSEATTCPLCPSVLLLTHLCKTV*KILST 445
             F T R+  + LP +F+ K + T C +C S L   + C     +++T
Sbjct: 366 GTFPTSRSFLLNLPLIFVCKEKDTECSICKSTLATKYRCHVHASLVNT 413


>05_04_0376 -
           20754386-20755392,20755683-20756320,20756433-20756627,
           20757730-20757795,20757942-20758007,20758402-20758445
          Length = 671

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 566 LVYVYHFFGVGDYVQSKNFDSDFNYPLNVDIRPIVQHTR 682
           ++YV H+ G+  ++  +++D ++N PL  +    V H R
Sbjct: 546 ILYVLHYLGMKPWLCFRDYDCNWNIPLMREFASDVAHAR 584


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 280 ENY*SHGAFCLHFYLHNHGEDYLHHFQH 197
           E++ +HG  C H + H+H   + H   H
Sbjct: 487 EHHHAHGGSCSHSHSHSHSHSHSHSHSH 514


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 670 DYRSNVYVERIIEIAIEVLGLHVIADTEKMVNIYKYQSEY 551
           D +  + +    E+   VLGL      +K+VN  K+QSEY
Sbjct: 98  DKKKCIEIPVACELLNLVLGLQFRPQVDKLVNYLKHQSEY 137


>06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255
          Length = 863

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = -3

Query: 420 LQRCVNRRTDGHRGQVVASDLSMKTGNLTVNALQVTNKLSELNYAFTRIIEAMVLFVSIS 241
           ++ C++      RG    S L+ K   +           S++     R++E  V  VSI 
Sbjct: 79  IEDCIDLSVHRLRGSAGESGLAAKVARMAKKIGAFRQIASQIQKLKARVVEHGVRMVSIV 138

Query: 240 ICTTMGKT 217
            C  +GKT
Sbjct: 139 GCAGLGKT 146


>01_06_1550 +
           38191957-38192054,38193084-38193284,38193456-38194090,
           38194398-38195419
          Length = 651

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 566 LVYVYHFFGVGDYVQSKNFDSDFNYPLNVDIRPIVQHTR 682
           ++YV H+ G+  ++  +++D ++N P+  +    V H R
Sbjct: 521 ILYVLHYLGLKPWLCFRDYDCNWNNPILREFASDVAHAR 559


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,340,005
Number of Sequences: 37544
Number of extensions: 359598
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)