Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00505
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.7  
SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28)                  29   3.6  
SB_26946| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_30463| Best HMM Match : ZF-HD_dimer (HMM E-Value=5.4)               28   8.3  
SB_36015| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 789

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 339 GCPSSYSNPKPLPAPCV 389
           GCPS+ S P P PAP V
Sbjct: 703 GCPSTTSTPAPAPAPAV 719


>SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28)
          Length = 329

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +2

Query: 191 NEMLKMMQIVFPMVVQIEMETKSTMASIILVKA*FNSLSLFVTWRALTVRLPVFILKSEA 370
           +E L+  QI +   + I +    T    IL+    N+L L   W+  T+  P  IL S  
Sbjct: 12  SEWLQCGQISYTEFIGITLINGLTFVPAILL----NALVLAAIWKTATLHTPAMILLSNL 67

Query: 371 TTCPLCPSVL 400
               LC  +L
Sbjct: 68  ALSDLCVGLL 77


>SB_26946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 269 KPWCFLSPFLFAQPWGRLFASFSTSHYQLLL*LHRVWKHNQAI 141
           K W FL P + A+ W R+    +     +++  + V KH Q I
Sbjct: 53  KSWLFLPPVMSAESWTRISTIVARFGAVIIVVCNHVLKHQQKI 95


>SB_30463| Best HMM Match : ZF-HD_dimer (HMM E-Value=5.4)
          Length = 276

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 262 GAFCLHFYLHNHGEDY 215
           G +CL FYLH  GE Y
Sbjct: 106 GNYCLQFYLHKSGEIY 121


>SB_36015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 262 GAFCLHFYLHNHGEDY 215
           G +CL FYLH  GE Y
Sbjct: 106 GNYCLQFYLHKSGEIY 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,333,916
Number of Sequences: 59808
Number of extensions: 428545
Number of successful extensions: 1114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)