Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00505
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29537-8|ABS83848.1|  258|Caenorhabditis elegans Hypothetical pr...    35   0.064
U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical p...    31   1.0  
Z81078-2|CAI79243.1|  148|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.     29   4.2  
AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine re...    28   5.5  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U29537-8|ABS83848.1|  258|Caenorhabditis elegans Hypothetical
           protein F28B12.1b protein.
          Length = 258

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -3

Query: 357 SMKTGNLTVNALQVTNKLSELNYAFTRIIEAMVLFVS-ISICTTMGKTICII 205
           S +T  + VN L  +NKL E    +TRII+++VL +  +++  T+ KT  ++
Sbjct: 34  SDETFRIVVNYLVTSNKLEETRVKYTRIIDSLVLQMDCLNLIATLTKTNLVV 85


>U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical
           protein C37C3.3 protein.
          Length = 265

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 92  SVDQMRQILNEIIDALESPDYASKLDEA 175
           ++D+ R++  EI DA+ +P + + +DEA
Sbjct: 180 NIDEQREVAKEIADAISNPGFNNAIDEA 207


>Z81078-2|CAI79243.1|  148|Caenorhabditis elegans Hypothetical
           protein F36H2.4 protein.
          Length = 148

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 518 LIMRRNRYKLIVFALVLVYVYHFFGVGDYVQSKNFDSDFNYPLNVDIRPIVQHT 679
           LI  R+R   IVF++ L+Y      VG      N + D N+ + VD+  +  +T
Sbjct: 67  LICARSRTLFIVFSVYLMYRISSLSVGITTSLYNIEEDLNFVI-VDVSTLFIYT 119


>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 205 NDANSLPHGCANRNGDKKHHGFNNSREGIVQ--FTQLIRDLESIDGEVARLHTQIRSHYL 378
           NDA  L  G      D++ +G + SR G+VQ   TQL+  L+       R+  ++ S  +
Sbjct: 86  NDATVLAMGAKTNGKDERLYGNSVSRNGLVQMAITQLMNALDDNKDSEERIQVRM-SAIM 144

Query: 379 PPVSISSSVD 408
              + SS VD
Sbjct: 145 VSQNESSIVD 154


>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 205 NDANSLPHGCANRNGDKKHHGFNNSREGIVQ--FTQLIRDLESIDGEVARLHTQIRSHYL 378
           NDA  L  G      D++ +G + SR G+VQ   TQL+  L+       R+  ++ S  +
Sbjct: 86  NDATVLAMGAKTNGKDERLYGNSVSRNGLVQMAITQLMNALDDNKDSEERIQVRM-SAIM 144

Query: 379 PPVSISSSVD 408
              + SS VD
Sbjct: 145 VSQNESSIVD 154


>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
          Length = 1066

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 205 NDANSLPHGCANRNGDKKHHGFNNSREGIVQ--FTQLIRDLESIDGEVARLHTQIRSHYL 378
           NDA  L  G      D++ +G + SR G+VQ   TQL+  L+       R+  ++ S  +
Sbjct: 86  NDATVLAMGAKTNGKDERLYGNSVSRNGLVQMAITQLMNALDDNKDSEERIQVRM-SAIM 144

Query: 379 PPVSISSSVD 408
              + SS VD
Sbjct: 145 VSQNESSIVD 154


>AC024881-4|AAK71412.2|  314|Caenorhabditis elegans Serpentine
           receptor, class sx protein5 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 597 PTPKKW*TYTSTKANTINLYLFLLIISLFKY 505
           PT  ++ T+++   NTI L LF+ +I +F Y
Sbjct: 164 PTVSRFWTFSNVVINTITLILFISLILVFYY 194


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = -1

Query: 545 IYICFSSL----SVFLSTLRFAIFHNLLFGIFP*HLVRLIISFIL 423
           IYIC + +    +VFLS+  F    NL F  +  H++ ++++++L
Sbjct: 617 IYICHTGIGGPVNVFLSSNFFLPLANLSFSAYLFHMIPVVLTYML 661


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,525
Number of Sequences: 27780
Number of extensions: 331784
Number of successful extensions: 940
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)